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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10512-RA through 18771 annotations produced 1 hits



(CG10512):

Annotation Number : CG10512
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037057
Gbrowse : chr3L:21196019-21201194 (+) // 100.0 //
Probeset : 1636843_a_at
Accessions : protein= NP_649289; /// NP_730605; /// NP_730606; /// NP_996133;, nucleotide= NM_141032; /// NM_168889; /// NM_168890; /// NM_206411;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0037057.
BDGP gene expression has embryonic in situ data for CG10512: 18 pix of staining in 2 body parts.
BioGrid reports that CG10512 interacts with CG1567 CG7172 CG8316 .
VDRC has 2 RNAi stocks for FBgn0037057 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain232 ± 74 of 4 1.10None
Head520 ± 414 of 4 2.40Up
Eye247 ± 214 of 4 1.14None
Thoracicoabdominal ganglion329 ± 74 of 4 1.50Up
Salivary gland223 ± 134 of 4 1.03None
Crop486 ± 204 of 4 2.20Up
Midgut169 ± 64 of 4 0.80None
Tubule491 ± 624 of 4 2.30Up
Hindgut707 ± 184 of 4 3.30Up
Heart548 ± 224 of 4 2.53Up
Fat body1102 ± 1214 of 4 5.09Up
Ovary34 ± 24 of 4 0.20Down
Testis501 ± 204 of 4 2.30Up
Male accessory glands38 ± 34 of 4 0.20Down
Virgin spermatheca1841 ± 904 of 4 8.50Up
Mated spermatheca1523 ± 704 of 4 7.03Up
Adult carcass584 ± 534 of 4 2.70Up
Larval CNS485 ± 724 of 4 2.24Up
Larval Salivary gland951 ± 624 of 4 4.39Up
Larval midgut1101 ± 674 of 4 5.08Up
Larval tubule3686 ± 704 of 417.00Up
Larval hindgut1183 ± 144 of 4 5.46Up
Larval fat body1265 ± 1034 of 4 5.80Up
Larval trachea330 ± 574 of 4 1.52Up
Larval carcass1979 ± 2024 of 4 9.13Up
S2 cells (growing)399 ± 104 of 4 1.84Up
Whole fly216 ± 164 of 4

Looking for CG10512-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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