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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10513-RA through 18771 annotations produced 1 hits



(CG10513):

Annotation Number : CG10513
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039311
Gbrowse : chr3R:21101513-21102967 (-) // 100.0 //
Probeset : 1623265_at
Accessions : protein= NP_651370;, nucleotide= NM_143113;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039311.
BioGrid reports that CG10513 interacts with CG11726 CG13168 CG8161 CG2843 CG7757 .
VDRC has 1 RNAi stocks for FBgn0039311 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain456 ± 134 of 4 1.50None
Head119 ± 204 of 4 0.40None
Eye7 ± 21 of 4 0.02Down
Thoracicoabdominal ganglion528 ± 314 of 4 1.70Up
Salivary gland12 ± 41 of 4 0.04Down
Crop6 ± 10 of 4 0.00Down
Midgut5 ± 10 of 4 0.00Down
Tubule6468 ± 3154 of 420.90Up
Hindgut74 ± 94 of 4 0.20Down
Heart10 ± 22 of 4 0.03Down
Fat body69 ± 1301 of 4 0.23Down
Ovary1 ± 00 of 4 0.00Down
Testis75 ± 104 of 4 0.20Down
Male accessory glands8 ± 20 of 4 0.00Down
Virgin spermatheca7 ± 21 of 4 0.02Down
Mated spermatheca15 ± 13 of 4 0.05Down
Adult carcass36 ± 64 of 4 0.10Down
Larval CNS0 ± 10 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut2 ± 10 of 4 0.01Down
Larval tubule5834 ± 1874 of 418.90Up
Larval hindgut50 ± 84 of 4 0.16Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea1 ± 00 of 4 0.00Down
Larval carcass4 ± 10 of 4 0.01Down
S2 cells (growing)2 ± 10 of 4 0.01Down
Whole fly309 ± 684 of 4

Looking for CG10513-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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