FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10521-RA through 18771 annotations produced 1 hits

NETRIN (NetB):

Annotation Number : CG10521
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015774
Gbrowse : chrX:14581639-14643307 (-) // 99.81 //
Probeset : 1636954_at
Accessions : protein= NP_001162753; /// NP_001162754; /// NP_001162755; /// NP_511155;, nucleotide= NM_001169282; /// NM_001169283; /// NM_001169284; /// NM_078600;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0015774.
BDGP gene expression has embryonic in situ data for NetB: 42 pix of staining in 19 body parts.
Homophila reports that CG10521 is a close match (6e-14) to human gene HSPG2;PLC;SJS;SJA;SJS1 (NP_005520), a gene associated with Dyssegmental dysplasia, Silverman-Handmaker type, 224410 (3);Schwartz-Jampel syndrome, type 1, 255800 (3).
BioGrid reports that CG10521 interacts with CG8581 CG8581 CG8166 .
TRiP has 2 RNAi stocks for FBgn0015774 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015774 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	628 ± 13	4 of 4	20.30	Up
Head	149 ± 11	4 of 4	4.80	Up
Eye	120 ± 16	4 of 4	3.90	Up
Thoracicoabdominal ganglion	588 ± 30	4 of 4	19.00	Up
Salivary gland	19 ± 3	2 of 4	0.63	Down
Crop	24 ± 1	4 of 4	0.80	None
Midgut	37 ± 1	4 of 4	1.20	None
Tubule	11 ± 2	2 of 4	0.40	Down
Hindgut	49 ± 1	4 of 4	1.60	Up
Heart	59 ± 5	4 of 4	1.91	Up
Fat body	29 ± 9	4 of 4	0.96	None
Ovary	9 ± 0	4 of 4	0.30	Down
Testis	8 ± 0	4 of 4	0.30	Down
Male accessory glands	17 ± 1	3 of 4	0.60	Down
Virgin spermatheca	39 ± 1	4 of 4	1.26	None
Mated spermatheca	50 ± 6	4 of 4	1.63	Up
Adult carcass	32 ± 3	4 of 4	1.10	None
Larval CNS	782 ± 34	4 of 4	25.29	Up
Larval Salivary gland	8 ± 1	2 of 4	0.26	Down
Larval midgut	14 ± 2	3 of 4	0.46	Down
Larval tubule	53 ± 6	4 of 4	1.70	Up
Larval hindgut	26 ± 1	4 of 4	0.85	None
Larval fat body	68 ± 3	4 of 4	2.20	Up
Larval trachea	43 ± 3	4 of 4	1.40	Up
Larval carcass	46 ± 0	4 of 4	1.51	Up
S2 cells (growing)	7 ± 1	2 of 4	0.24	Down
Whole fly	31 ± 2	4 of 4

Looking for CG10521-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720