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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10527-RA through 18771 annotations produced 1 hits



Farnesoic acid O-methyltransferase (CG10527):

Annotation Number : CG10527
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034583
Gbrowse : chr2R:16957567-16960290 (-) // 100.0 //
Probeset : 1636040_at
Accessions : protein= NP_611544;, nucleotide= NM_137700;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0019010 // farnesoic acid O-methyltransferase activ
FlyMine data for FBgn0034583.
BDGP gene expression has embryonic in situ data for CG10527: 10 pix of staining in 4 body parts.
BioGrid reports that CG10527 interacts with CG13321 CG13928 CG32491 CG3884 CG10960 CG11138 CG11164 CG14534 CG17903 CG2099 CG7753 CG4183 CG7417 CG9184 .
VDRC has 3 RNAi stocks for FBgn0034583 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain812 524 of 4 1.10None
Head1389 864 of 4 1.90Up
Eye458 684 of 4 0.62Down
Thoracicoabdominal ganglion1963 364 of 4 2.60Up
Salivary gland4999 1814 of 4 6.72Up
Crop2652 884 of 4 3.60Up
Midgut127 54 of 4 0.20Down
Tubule245 554 of 4 0.30Down
Hindgut2399 874 of 4 3.20Up
Heart716 774 of 4 0.96None
Fat body1163 574 of 4 1.56Up
Ovary538 364 of 4 0.70None
Testis256 144 of 4 0.30Down
Male accessory glands481 604 of 4 0.60Down
Virgin spermatheca1391 684 of 4 1.87Up
Mated spermatheca1792 884 of 4 2.41Up
Adult carcass1127 324 of 4 1.50Up
Larval CNS743 1444 of 4 1.00None
Larval Salivary gland3425 554 of 4 4.60Up
Larval midgut265 344 of 4 0.36Down
Larval tubule1322 464 of 4 1.80Up
Larval hindgut2650 574 of 4 3.56Up
Larval fat body3726 3614 of 4 5.00Up
Larval trachea1600 3054 of 4 2.15Up
Larval carcass2810 2264 of 4 3.78Up
S2 cells (growing)2060 384 of 4 2.77Up
Whole fly744 714 of 4

Looking for CG10527-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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