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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10535-RA through 18771 annotations produced 1 hits



Elongator complex protein 1 (Elp1):

Annotation Number : CG10535
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037926
Gbrowse : chr3R:7476709-7481062 (+) // 100.0 //
Probeset : 1641298_at
Accessions : protein= NP_650098;, nucleotide= NM_141841;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structur
Interpro : 0003968 // RNA-directed RNA polymerase activity // inferred from direct assay /// 0005515 // protein binding // inferred
FlyMine data for FBgn0037926.
BDGP gene expression has embryonic in situ data for CG10535: 25 pix of staining in 12 body parts.
Homophila reports that CG10535 is a close match (6e-142) to human gene IKAP;IKBKAP (NP_003631), a gene associated with Dysautonomia, familial, 223900 (3).
BioGrid reports that CG10535 interacts with CG30393 CG12985 CG30327 CG8368 .
VDRC has 5 RNAi stocks for FBgn0037926 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 24 of 4 1.00None
Head49 24 of 4 0.80Down
Eye39 14 of 4 0.60Down
Thoracicoabdominal ganglion65 34 of 4 1.00None
Salivary gland96 74 of 4 1.47Up
Crop68 24 of 4 1.00None
Midgut43 24 of 4 0.70Down
Tubule69 54 of 4 1.10None
Hindgut50 14 of 4 0.80Down
Heart63 44 of 4 0.97None
Fat body66 54 of 4 1.00None
Ovary120 34 of 4 1.80Up
Testis23 04 of 4 0.40Down
Male accessory glands117 94 of 4 1.80Up
Virgin spermatheca51 44 of 4 0.79Down
Mated spermatheca70 34 of 4 1.07None
Adult carcass53 34 of 4 0.80Down
Larval CNS118 34 of 4 1.80Up
Larval Salivary gland100 24 of 4 1.53Up
Larval midgut35 11 of 4 0.54Down
Larval tubule28 34 of 4 0.40Down
Larval hindgut63 34 of 4 0.96None
Larval fat body21 62 of 4 0.30Down
Larval trachea81 74 of 4 1.24Up
Larval carcass69 94 of 4 1.06None
S2 cells (growing)132 24 of 4 2.02Up
Whole fly65 04 of 4

Looking for CG10535-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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