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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10537-RA through 18771 annotations produced 1 hits



GABA receptor (Rdl):

Annotation Number : CG10537
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004244
Gbrowse : chr3L:9143698-9170704 (-) // 99.84 //
Probeset : 1635005_a_at
Accessions : protein= NP_523991; /// NP_729461; /// NP_729462;, nucleotide= NM_079267; /// NM_168321; /// NM_168322;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred
FlyMine data for FBgn0004244.
Homophila reports that CG10537 is a close match (7e-11) to human gene ACHRD;CHRND;CMS2A;FCCMS;SCCMS (NP_000742), a gene associated with Multiple pterygium syndrome, lethal type, 253290 (3);Myasthenic syndrome, fast-channel congenital, 608930 (3);Myasthenic syndrome, slow-channel congenital, 601462 (3).
TRiP has 2 RNAi stocks for FBgn0004244 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004244 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain453 124 of 429.30Up
Head39 54 of 4 2.60Up
Eye78 24 of 4 5.05Up
Thoracicoabdominal ganglion386 254 of 425.00Up
Salivary gland28 40 of 4 1.83None
Crop5 20 of 4 0.30None
Midgut4 20 of 4 0.30None
Tubule4 00 of 4 0.30Down
Hindgut6 10 of 4 0.40None
Heart3 10 of 4 0.25None
Fat body21 161 of 4 1.39None
Ovary1 00 of 4 0.10Down
Testis4 10 of 4 0.30None
Male accessory glands5 20 of 4 0.30None
Virgin spermatheca37 43 of 4 2.44Up
Mated spermatheca29 82 of 4 1.90None
Adult carcass11 20 of 4 0.80None
Larval CNS129 184 of 4 8.37Up
Larval Salivary gland9 20 of 4 0.59None
Larval midgut5 20 of 4 0.36None
Larval tubule8 30 of 4 0.60None
Larval hindgut7 20 of 4 0.51None
Larval fat body4 20 of 4 0.30None
Larval trachea6 30 of 4 0.40None
Larval carcass7 10 of 4 0.49None
S2 cells (growing)3 20 of 4 0.24None
Whole fly15 41 of 4

Looking for CG10537-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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