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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10546-RA through 18771 annotations produced 1 hits



Cellular retinaldehyde binding protein (Cralbp):

Annotation Number : CG10546
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035636
Gbrowse : chr3L:5776580-5777555 (-) // 100.0 //
Probeset : 1627833_at
Accessions : protein= NP_523939;, nucleotide= NM_079215;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0016918 // retinal binding // inferred from s
FlyMine data for FBgn0035636.
Homophila reports that CG10546 is a close match (2e-14) to human gene AVED;TTP1;TTPA (NP_000361), a gene associated with Ataxia with isolated vitamin E deficiency, 277460 (3).
VDRC has 2 RNAi stocks for FBgn0035636 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.20Down
Head77 14 of 4 3.60Up
Eye3 10 of 4 0.18Down
Thoracicoabdominal ganglion4 00 of 4 0.20Down
Salivary gland5 30 of 4 0.27Down
Crop478 334 of 422.60Up
Midgut53 34 of 4 2.50Up
Tubule6 10 of 4 0.30Down
Hindgut8 10 of 4 0.40Down
Heart1 00 of 4 0.06Down
Fat body1 00 of 4 0.08Down
Ovary2 10 of 4 0.10Down
Testis2 00 of 4 0.10Down
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.19Down
Mated spermatheca3 10 of 4 0.17Down
Adult carcass22 31 of 4 1.00None
Larval CNS5 30 of 4 0.25Down
Larval Salivary gland2 10 of 4 0.09Down
Larval midgut3 10 of 4 0.14Down
Larval tubule6 10 of 4 0.30Down
Larval hindgut5 00 of 4 0.27Down
Larval fat body2 10 of 4 0.10Down
Larval trachea6 30 of 4 0.30Down
Larval carcass25 33 of 4 1.20None
S2 cells (growing)3 10 of 4 0.17Down
Whole fly21 14 of 4

Looking for CG10546-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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