FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10546-RA through 18771 annotations produced 1 hits

Cellular retinaldehyde binding protein (Cralbp):

Annotation Number : CG10546
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035636
Gbrowse : chr3L:5776580-5777555 (-) // 100.0 //
Probeset : 1627833_at
Accessions : protein= NP_523939;, nucleotide= NM_079215;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0016918 // retinal binding // inferred from s
FlyMine data for FBgn0035636.
Homophila reports that CG10546 is a close match (2e-14) to human gene AVED;TTP1;TTPA (NP_000361), a gene associated with Ataxia with isolated vitamin E deficiency, 277460 (3).
VDRC has 2 RNAi stocks for FBgn0035636 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	0.20	Down
Head	77 ± 1	4 of 4	3.60	Up
Eye	3 ± 1	0 of 4	0.18	Down
Thoracicoabdominal ganglion	4 ± 0	0 of 4	0.20	Down
Salivary gland	5 ± 3	0 of 4	0.27	Down
Crop	478 ± 33	4 of 4	22.60	Up
Midgut	53 ± 3	4 of 4	2.50	Up
Tubule	6 ± 1	0 of 4	0.30	Down
Hindgut	8 ± 1	0 of 4	0.40	Down
Heart	1 ± 0	0 of 4	0.06	Down
Fat body	1 ± 0	0 of 4	0.08	Down
Ovary	2 ± 1	0 of 4	0.10	Down
Testis	2 ± 0	0 of 4	0.10	Down
Male accessory glands	1 ± 0	0 of 4	0.10	Down
Virgin spermatheca	3 ± 1	0 of 4	0.19	Down
Mated spermatheca	3 ± 1	0 of 4	0.17	Down
Adult carcass	22 ± 3	1 of 4	1.00	None
Larval CNS	5 ± 3	0 of 4	0.25	Down
Larval Salivary gland	2 ± 1	0 of 4	0.09	Down
Larval midgut	3 ± 1	0 of 4	0.14	Down
Larval tubule	6 ± 1	0 of 4	0.30	Down
Larval hindgut	5 ± 0	0 of 4	0.27	Down
Larval fat body	2 ± 1	0 of 4	0.10	Down
Larval trachea	6 ± 3	0 of 4	0.30	Down
Larval carcass	25 ± 3	3 of 4	1.20	None
S2 cells (growing)	3 ± 1	0 of 4	0.17	Down
Whole fly	21 ± 1	4 of 4

Looking for CG10546-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720