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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10550-RB through 18771 annotations produced 1 hits



(CG10550):

Annotation Number : CG10550
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039321
Gbrowse : chr3R:21132127-21134109 (-) // 100.0 //
Probeset : 1639660_s_at
Accessions : protein= NP_651380; /// NP_733097; /// NP_733098;, nucleotide= NM_143123; /// NM_170218; /// NM_170219;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039321.
BioGrid reports that CG10550 interacts with CG13996 CG1746 CG9986 .
VDRC has 2 RNAi stocks for FBgn0039321 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain702 ± 254 of 4 2.40Up
Head1423 ± 364 of 4 4.80Up
Eye1136 ± 1144 of 4 3.85Up
Thoracicoabdominal ganglion1013 ± 264 of 4 3.40Up
Salivary gland206 ± 124 of 4 0.70Down
Crop2649 ± 1384 of 4 9.00Up
Midgut954 ± 734 of 4 3.20Up
Tubule56 ± 24 of 4 0.20Down
Hindgut1442 ± 224 of 4 4.90Up
Heart319 ± 84 of 4 1.08None
Fat body106 ± 184 of 4 0.36Down
Ovary4 ± 10 of 4 0.00Down
Testis9 ± 04 of 4 0.00Down
Male accessory glands36 ± 64 of 4 0.10Down
Virgin spermatheca134 ± 74 of 4 0.45Down
Mated spermatheca172 ± 94 of 4 0.59Down
Adult carcass961 ± 564 of 4 3.30Up
Larval CNS146 ± 264 of 4 0.50Down
Larval Salivary gland88 ± 24 of 4 0.30Down
Larval midgut746 ± 584 of 4 2.53Up
Larval tubule28 ± 44 of 4 0.10Down
Larval hindgut427 ± 674 of 4 1.45None
Larval fat body13 ± 40 of 4 0.00Down
Larval trachea326 ± 494 of 4 1.11None
Larval carcass158 ± 194 of 4 0.54Down
S2 cells (growing)209 ± 94 of 4 0.71Down
Whole fly294 ± 114 of 4

Looking for CG10550-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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