Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10560-RA through 18771 annotations produced 1 hits



(CG10560):

Annotation Number : CG10560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039325
Gbrowse : chr3R:21144271-21145801 (-) // 100.0 //
Probeset : 1627144_at
Accessions : protein= NP_651384;, nucleotide= NM_143127;
FlyMine data for FBgn0039325.
VDRC has 6 RNAi stocks for FBgn0039325 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 34 of 4 0.30Down
Head572 ± 374 of 4 2.30Up
Eye328 ± 634 of 4 1.31None
Thoracicoabdominal ganglion59 ± 34 of 4 0.20Down
Salivary gland14 ± 40 of 4 0.06Down
Crop101 ± 124 of 4 0.40Down
Midgut8 ± 11 of 4 0.00Down
Tubule5562 ± 1344 of 422.20Up
Hindgut55 ± 94 of 4 0.20Down
Heart12 ± 30 of 4 0.05Down
Fat body19 ± 202 of 4 0.08Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.00Down
Male accessory glands8 ± 10 of 4 0.00Down
Virgin spermatheca6 ± 40 of 4 0.03Down
Mated spermatheca4 ± 10 of 4 0.02Down
Adult carcass345 ± 124 of 4 1.40Up
Larval CNS2 ± 20 of 4 0.01Down
Larval Salivary gland6 ± 21 of 4 0.02Down
Larval midgut4 ± 20 of 4 0.02Down
Larval tubule737 ± 1114 of 4 2.90Up
Larval hindgut21 ± 62 of 4 0.09Down
Larval fat body10 ± 20 of 4 0.00Down
Larval trachea4 ± 61 of 4 0.02Down
Larval carcass9 ± 30 of 4 0.04Down
S2 cells (growing)2 ± 10 of 4 0.01Down
Whole fly250 ± 174 of 4

Looking for CG10560-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime