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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10562-RA through 18771 annotations produced 1 hits



(CG10562):

Annotation Number : CG10562
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039326
Gbrowse : chr3R:21146773-21148473 (-) // 100.0 //
Probeset : 1638226_at
Accessions : protein= NP_651385;, nucleotide= NM_143128;
FlyMine data for FBgn0039326.
VDRC has 2 RNAi stocks for FBgn0039326 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 ± 24 of 4 0.50Down
Head176 ± 84 of 4 1.80Up
Eye79 ± 74 of 4 0.82None
Thoracicoabdominal ganglion102 ± 64 of 4 1.10None
Salivary gland292 ± 84 of 4 3.02Up
Crop292 ± 84 of 4 3.00Up
Midgut1120 ± 214 of 411.60Up
Tubule843 ± 1684 of 4 8.70Up
Hindgut313 ± 134 of 4 3.20Up
Heart187 ± 104 of 4 1.93Up
Fat body13 ± 10 of 4 0.14Down
Ovary1 ± 00 of 4 0.00Down
Testis4 ± 00 of 4 0.00Down
Male accessory glands18 ± 13 of 4 0.20Down
Virgin spermatheca7 ± 00 of 4 0.07Down
Mated spermatheca8 ± 10 of 4 0.09Down
Adult carcass155 ± 54 of 4 1.60Up
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland5 ± 10 of 4 0.05Down
Larval midgut215 ± 124 of 4 2.22Up
Larval tubule8 ± 20 of 4 0.10Down
Larval hindgut44 ± 44 of 4 0.46Down
Larval fat body9 ± 10 of 4 0.10Down
Larval trachea3 ± 40 of 4 0.04Down
Larval carcass3 ± 10 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly97 ± 124 of 4

Looking for CG10562-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime