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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10572-RA through 18771 annotations produced 1 hits



Cyclin-dependent kinase 8 (Cdk8):

Annotation Number : CG10572
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015618
Gbrowse : chr3L:9830184-9831750 (-) // 100.0 //
Probeset : 1630579_at
Accessions : protein= NP_536735;, nucleotide= NM_080487;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00165
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0015618.
BDGP gene expression has embryonic in situ data for Cdk8: 4 pix of staining in 1 body parts.
Homophila reports that CG10572 is a close match (1e-14) to human gene PHKG2 (NP_000285), a gene associated with Glycogenosis, hepatic, autosomal (3).
BioGrid reports that CG10572 interacts with CG7281 CG7281 .
TRiP has 1 RNAi stocks for FBgn0015618 available for purchase.
VDRC has 4 RNAi stocks for FBgn0015618 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 14 of 4 0.80None
Head31 14 of 4 0.50Down
Eye39 34 of 4 0.64Down
Thoracicoabdominal ganglion39 44 of 4 0.60Down
Salivary gland52 64 of 4 0.86None
Crop48 24 of 4 0.80None
Midgut36 14 of 4 0.60Down
Tubule29 14 of 4 0.50Down
Hindgut36 04 of 4 0.60Down
Heart24 14 of 4 0.40Down
Fat body26 43 of 4 0.44Down
Ovary136 24 of 4 2.20Up
Testis11 20 of 4 0.20Down
Male accessory glands43 23 of 4 0.70Down
Virgin spermatheca41 24 of 4 0.68Down
Mated spermatheca40 34 of 4 0.67Down
Adult carcass22 21 of 4 0.40Down
Larval CNS104 14 of 4 1.71Up
Larval Salivary gland55 44 of 4 0.91None
Larval midgut38 24 of 4 0.63Down
Larval tubule63 14 of 4 1.00None
Larval hindgut39 24 of 4 0.64Down
Larval fat body45 54 of 4 0.70None
Larval trachea61 94 of 4 1.01None
Larval carcass46 44 of 4 0.76None
S2 cells (growing)67 14 of 4 1.11None
Whole fly60 44 of 4

Looking for CG10572-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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