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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10573-RA through 18771 annotations produced 1 hits



knockout (ko):

Annotation Number : CG10573
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020294
Gbrowse : chr3L:21068666-21124259 (-) // 100.0 //
Probeset : 1641310_at
Accessions : protein= NP_524193;, nucleotide= NM_079469;
FlyMine data for FBgn0020294.
BDGP gene expression has embryonic in situ data for ko: 19 pix of staining in 6 body parts.
Homophila reports that CG10573 is a close match (1e-13) to human gene PEE4;STOX1 (NP_689922), a gene associated with Preeclampsia/eclampsia 4 (3).
BioGrid reports that CG10573 interacts with CG8407 CG12306 CG12470 CG1676 CG5450 CG6998 .
VDRC has 2 RNAi stocks for FBgn0020294 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 ± 34 of 4 2.50Up
Head86 ± 14 of 4 2.20Up
Eye109 ± 64 of 4 2.79Up
Thoracicoabdominal ganglion101 ± 54 of 4 2.60Up
Salivary gland384 ± 64 of 4 9.82Up
Crop137 ± 34 of 4 3.50Up
Midgut41 ± 24 of 4 1.10None
Tubule17 ± 33 of 4 0.50Down
Hindgut77 ± 44 of 4 2.00Up
Heart43 ± 74 of 4 1.11None
Fat body27 ± 64 of 4 0.70None
Ovary14 ± 14 of 4 0.40Down
Testis12 ± 04 of 4 0.30Down
Male accessory glands72 ± 104 of 4 1.80Up
Virgin spermatheca124 ± 44 of 4 3.17Up
Mated spermatheca148 ± 94 of 4 3.79Up
Adult carcass46 ± 44 of 4 1.20None
Larval CNS86 ± 114 of 4 2.22Up
Larval Salivary gland51 ± 44 of 4 1.32None
Larval midgut17 ± 14 of 4 0.44Down
Larval tubule19 ± 14 of 4 0.50Down
Larval hindgut292 ± 154 of 4 7.49Up
Larval fat body61 ± 44 of 4 1.60Up
Larval trachea337 ± 164 of 4 8.64Up
Larval carcass271 ± 314 of 4 6.95Up
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly39 ± 64 of 4

Looking for CG10573-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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