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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10583-RA through 18771 annotations produced 1 hits



separase (Sse):

Annotation Number : CG10583
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035627
Gbrowse : chr3L:5652793-5655341 (-) // 100.0 //
Probeset : 1640859_at
Accessions : protein= NP_523935;, nucleotide= NM_079211;
Pathway : engulfment // inferred from mutant phenotype /// 0007127 // meiosis I // non-traceable author statement"
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0035627.
BDGP gene expression has embryonic in situ data for Sse: 4 pix of staining in 1 body parts.
BioGrid reports that CG10583 interacts with CG5785 .
VDRC has 3 RNAi stocks for FBgn0035627 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head4 01 of 4 0.10Down
Eye15 14 of 4 0.20Down
Thoracicoabdominal ganglion4 11 of 4 0.10Down
Salivary gland13 21 of 4 0.17Down
Crop2 00 of 4 0.00Down
Midgut6 00 of 4 0.10Down
Tubule6 10 of 4 0.10Down
Hindgut5 10 of 4 0.10Down
Heart8 22 of 4 0.11Down
Fat body5 41 of 4 0.07Down
Ovary184 54 of 4 2.40Up
Testis24 24 of 4 0.30Down
Male accessory glands7 10 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.05Down
Mated spermatheca5 00 of 4 0.07Down
Adult carcass8 30 of 4 0.10Down
Larval CNS55 34 of 4 0.72Down
Larval Salivary gland2 00 of 4 0.03Down
Larval midgut12 11 of 4 0.16Down
Larval tubule6 10 of 4 0.10Down
Larval hindgut7 11 of 4 0.09Down
Larval fat body12 51 of 4 0.20Down
Larval trachea21 24 of 4 0.28Down
Larval carcass9 12 of 4 0.12Down
S2 cells (growing)53 34 of 4 0.69Down
Whole fly77 44 of 4

Looking for CG10583-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime