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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10586-RA through 18771 annotations produced 1 hits


(CG10586):

Annotation Number : CG10586
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037036
Gbrowse : chr3L:20948888-20949829 (-) // 100.0 //
Probeset : 1639845_at
Accessions : protein= NP_649270;, nucleotide= NM_141013;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // inferred f
FlyMine data for FBgn0037036.
Homophila reports that CG10586 is a close match (4e-11) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
VDRC has 2 RNAi stocks for FBgn0037036 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland4 ± 20 of 4 0.04Down
Crop4 ± 20 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body1 ± 00 of 4 0.01Down
Ovary2 ± 10 of 4 0.00Down
Testis11 ± 42 of 4 0.10Down
Male accessory glands7064 ± 1524 of 458.00Up
Virgin spermatheca2 ± 00 of 4 0.02Down
Mated spermatheca2 ± 00 of 4 0.02Down
Adult carcass10 ± 40 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut8 ± 20 of 4 0.07Down
Larval tubule3 ± 20 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body5 ± 20 of 4 0.00Down
Larval trachea1 ± 00 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly121 ± 184 of 4

Looking for CG10586-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime