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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10588-RA through 18771 annotations produced 1 hits



(CG10588):

Annotation Number : CG10588
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037037
Gbrowse : chr3L:20950080-20953257 (+) // 100.0 //
Probeset : 1630715_at
Accessions : protein= NP_649271;, nucleotide= NM_141014;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inf
FlyMine data for FBgn0037037.
VDRC has 3 RNAi stocks for FBgn0037037 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.30Down
Head2 10 of 4 0.20Down
Eye2 10 of 4 0.15Down
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland11 32 of 4 0.69None
Crop2 10 of 4 0.20Down
Midgut4 00 of 4 0.30Down
Tubule3 00 of 4 0.20Down
Hindgut4 00 of 4 0.30Down
Heart3 10 of 4 0.20Down
Fat body6 31 of 4 0.39Down
Ovary4 01 of 4 0.30Down
Testis230 94 of 414.00Up
Male accessory glands102 74 of 4 6.20Up
Virgin spermatheca4 00 of 4 0.25Down
Mated spermatheca3 10 of 4 0.22Down
Adult carcass5 31 of 4 0.40None
Larval CNS4 01 of 4 0.26Down
Larval Salivary gland6 10 of 4 0.37Down
Larval midgut4 10 of 4 0.26Down
Larval tubule5 12 of 4 0.30Down
Larval hindgut3 11 of 4 0.20Down
Larval fat body13 61 of 4 0.80None
Larval trachea2 10 of 4 0.15Down
Larval carcass4 11 of 4 0.29Down
S2 cells (growing)4 01 of 4 0.30Down
Whole fly16 24 of 4

Looking for CG10588-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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