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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10592-RA through 18771 annotations produced 1 hits



/// /// /// /// GA10422 /// /// /// (CG10592 /// DanaCG10592 /// DereCG10592 /// DperCG10592 /// DpseGA10422 /// DsecCG10592 /// DsimCG10592 /// DyakCG10592):

Annotation Number : CG10592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035619
Gbrowse : chr3L:5585840-5588372 (-) // 100.0 //
Probeset : 1636287_at
Accessions : protein= NP_647976;, nucleotide= NM_139719;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inf
FlyMine data for FBgn0035619.
BDGP gene expression has embryonic in situ data for CG10592: 4 pix of staining in 1 body parts.
Homophila reports that CG10592 is a close match (3e-96) to human gene (NP_001623), a gene associated with .
VDRC has 2 RNAi stocks for FBgn0035619 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.00Down
Head7 30 of 4 0.00Down
Eye1 00 of 4 0.00Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland12 50 of 4 0.03Down
Crop5 10 of 4 0.00Down
Midgut3464 1594 of 4 8.90Up
Tubule6 00 of 4 0.00Down
Hindgut6 20 of 4 0.00Down
Heart2 10 of 4 0.01Down
Fat body6 40 of 4 0.02Down
Ovary5 00 of 4 0.00Down
Testis6 20 of 4 0.00Down
Male accessory glands8 20 of 4 0.00Down
Virgin spermatheca4 10 of 4 0.01Down
Mated spermatheca5 20 of 4 0.01Down
Adult carcass10 40 of 4 0.00Down
Larval CNS3 00 of 4 0.01Down
Larval Salivary gland8 30 of 4 0.02Down
Larval midgut1104 1804 of 4 2.85Up
Larval tubule15 00 of 4 0.00Down
Larval hindgut73 184 of 4 0.19Down
Larval fat body5 20 of 4 0.00Down
Larval trachea3 20 of 4 0.01Down
Larval carcass11 10 of 4 0.03Down
S2 cells (growing)87 74 of 4 0.23Down
Whole fly388 174 of 4

Looking for CG10592-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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