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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10594-RA through 18771 annotations produced 1 hits



spook (spo):

Annotation Number : CG10594
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003486
Gbrowse : chr3L:5583182-5585677 (-) // 100.0 //
Probeset : 1636820_s_at
Accessions : protein= NP_647975;, nucleotide= NM_139718;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from ele
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0003486.
Homophila reports that CG10594 is a close match (4e-12) to human gene CA21H;CYP21;CYP21A2 (NP_000491), a gene associated with Adrenal hyperplasia, congenital, due to 21-hydroxylase deficiency (3);Hyperandrogenism, nonclassic type, due to 21-hydroxylase deficiency (3).
BioGrid reports that CG10594 interacts with CG15042 CG5820 .
VDRC has 2 RNAi stocks for FBgn0003486 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.30None
Head4 01 of 4 0.30None
Eye4 11 of 4 0.23None
Thoracicoabdominal ganglion4 00 of 4 0.20None
Salivary gland4 10 of 4 0.26None
Crop6 22 of 4 0.40None
Midgut3 00 of 4 0.20None
Tubule1 00 of 4 0.10Down
Hindgut5 10 of 4 0.30None
Heart5 12 of 4 0.31None
Fat body8 31 of 4 0.45None
Ovary35 14 of 4 2.00Up
Testis0 00 of 4 0.00Down
Male accessory glands2 10 of 4 0.20None
Virgin spermatheca4 10 of 4 0.23None
Mated spermatheca2 00 of 4 0.15None
Adult carcass4 20 of 4 0.30None
Larval CNS13 34 of 4 0.73None
Larval Salivary gland7 12 of 4 0.41None
Larval midgut3 00 of 4 0.19None
Larval tubule3 10 of 4 0.20None
Larval hindgut3 00 of 4 0.20None
Larval fat body5 10 of 4 0.30None
Larval trachea4 21 of 4 0.24None
Larval carcass3 10 of 4 0.19None
S2 cells (growing)2 00 of 4 0.14None
Whole fly18 54 of 4

Looking for CG10594-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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