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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10600-RA through 18771 annotations produced 1 hits



(CG10600):

Annotation Number : CG10600
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032717
Gbrowse : chr2L:18834497-18839667 (-) // 100.0 //
Probeset : 1626191_at
Accessions : protein= NP_001137839; /// NP_609913;, nucleotide= NM_001144367; /// NM_136069;
FlyMine data for FBgn0032717.
BioGrid reports that CG10600 interacts with CG15771 CG15781 CG3056 CG14578 CG7605 .
VDRC has 2 RNAi stocks for FBgn0032717 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 34 of 4 1.20None
Head37 ± 44 of 4 0.90None
Eye32 ± 54 of 4 0.74None
Thoracicoabdominal ganglion30 ± 14 of 4 0.70Down
Salivary gland104 ± 64 of 4 2.39Up
Crop36 ± 24 of 4 0.80None
Midgut98 ± 24 of 4 2.20Up
Tubule27 ± 14 of 4 0.60Down
Hindgut53 ± 14 of 4 1.20Up
Heart23 ± 24 of 4 0.54Down
Fat body27 ± 54 of 4 0.63Down
Ovary75 ± 24 of 4 1.70Up
Testis186 ± 134 of 4 4.20Up
Male accessory glands38 ± 34 of 4 0.90None
Virgin spermatheca18 ± 03 of 4 0.43Down
Mated spermatheca17 ± 43 of 4 0.40Down
Adult carcass49 ± 54 of 4 1.10None
Larval CNS57 ± 54 of 4 1.30Up
Larval Salivary gland49 ± 54 of 4 1.12None
Larval midgut54 ± 34 of 4 1.24None
Larval tubule29 ± 24 of 4 0.70Down
Larval hindgut32 ± 24 of 4 0.74Down
Larval fat body34 ± 74 of 4 0.80None
Larval trachea32 ± 14 of 4 0.73Down
Larval carcass23 ± 04 of 4 0.54Down
S2 cells (growing)99 ± 44 of 4 2.26Up
Whole fly43 ± 24 of 4

Looking for CG10600-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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