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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10601-RB through 18771 annotations produced 1 hits



mirror (mirr):

Annotation Number : CG10601
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014343
Gbrowse : chr3L:12686847-12702491 (+) // 100.0 //
Probeset : 1635669_a_at
Accessions : protein= NP_524047; /// NP_729818;, nucleotide= NM_079323; /// NM_168505;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from genet
FlyMine data for FBgn0014343.
BioGrid reports that CG10601 interacts with CG10580 .
TRiP has 1 RNAi stocks for FBgn0014343 available for purchase.
VDRC has 4 RNAi stocks for FBgn0014343 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 14 of 4 2.10Up
Head11 11 of 4 0.60None
Eye28 24 of 4 1.41None
Thoracicoabdominal ganglion59 24 of 4 2.90Up
Salivary gland16 40 of 4 0.78None
Crop16 10 of 4 0.80None
Midgut36 24 of 4 1.80Up
Tubule5 00 of 4 0.20Down
Hindgut12 12 of 4 0.60None
Heart58 34 of 4 2.83Up
Fat body49 84 of 4 2.39Up
Ovary10 12 of 4 0.50None
Testis16 12 of 4 0.80None
Male accessory glands16 20 of 4 0.80None
Virgin spermatheca3 00 of 4 0.14Down
Mated spermatheca7 30 of 4 0.37Down
Adult carcass44 54 of 4 2.20Up
Larval CNS53 14 of 4 2.58Up
Larval Salivary gland6 10 of 4 0.33Down
Larval midgut114 224 of 4 5.58Up
Larval tubule1 00 of 4 0.10Down
Larval hindgut6 20 of 4 0.30Down
Larval fat body36 54 of 4 1.80None
Larval trachea69 114 of 4 3.39Up
Larval carcass21 20 of 4 1.03None
S2 cells (growing)0 00 of 4 0.05Down
Whole fly20 34 of 4

Looking for CG10601-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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