FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10601-RB through 18771 annotations produced 1 hits

mirror (mirr):

Annotation Number : CG10601
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014343
Gbrowse : chr3L:12686847-12702491 (+) // 100.0 //
Probeset : 1635669_a_at
Accessions : protein= NP_524047; /// NP_729818;, nucleotide= NM_079323; /// NM_168505;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007224 // smoothened signaling pathway // inferred from genet
FlyMine data for FBgn0014343.
BioGrid reports that CG10601 interacts with CG10580 .
TRiP has 1 RNAi stocks for FBgn0014343 available for purchase.
VDRC has 4 RNAi stocks for FBgn0014343 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	42 ± 1	4 of 4	2.10	Up
Head	11 ± 1	1 of 4	0.60	None
Eye	28 ± 2	4 of 4	1.41	None
Thoracicoabdominal ganglion	59 ± 2	4 of 4	2.90	Up
Salivary gland	16 ± 4	0 of 4	0.78	None
Crop	16 ± 1	0 of 4	0.80	None
Midgut	36 ± 2	4 of 4	1.80	Up
Tubule	5 ± 0	0 of 4	0.20	Down
Hindgut	12 ± 1	2 of 4	0.60	None
Heart	58 ± 3	4 of 4	2.83	Up
Fat body	49 ± 8	4 of 4	2.39	Up
Ovary	10 ± 1	2 of 4	0.50	None
Testis	16 ± 1	2 of 4	0.80	None
Male accessory glands	16 ± 2	0 of 4	0.80	None
Virgin spermatheca	3 ± 0	0 of 4	0.14	Down
Mated spermatheca	7 ± 3	0 of 4	0.37	Down
Adult carcass	44 ± 5	4 of 4	2.20	Up
Larval CNS	53 ± 1	4 of 4	2.58	Up
Larval Salivary gland	6 ± 1	0 of 4	0.33	Down
Larval midgut	114 ± 22	4 of 4	5.58	Up
Larval tubule	1 ± 0	0 of 4	0.10	Down
Larval hindgut	6 ± 2	0 of 4	0.30	Down
Larval fat body	36 ± 5	4 of 4	1.80	None
Larval trachea	69 ± 11	4 of 4	3.39	Up
Larval carcass	21 ± 2	0 of 4	1.03	None
S2 cells (growing)	0 ± 0	0 of 4	0.05	Down
Whole fly	20 ± 3	4 of 4

Looking for CG10601-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720