FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10605-RA through 18771 annotations produced 1 hits

iroquois (caup):

Annotation Number : CG10605
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015919
Gbrowse : chr3L:12603225-12614908 (+) // 100.0 //
Probeset : 1624175_at
Accessions : protein= NP_524046;, nucleotide= NM_079322;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : engulfment // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from elect
FlyMine data for FBgn0015919.
BioGrid reports that CG10605 interacts with CG17051 CG7381 CG3936 .
VDRC has 3 RNAi stocks for FBgn0015919 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	44 ± 1	4 of 4	2.90	Up
Head	14 ± 1	4 of 4	0.90	None
Eye	24 ± 5	4 of 4	1.59	None
Thoracicoabdominal ganglion	110 ± 3	4 of 4	7.30	Up
Salivary gland	8 ± 2	1 of 4	0.56	None
Crop	6 ± 1	1 of 4	0.40	Down
Midgut	57 ± 2	4 of 4	3.80	Up
Tubule	3 ± 0	0 of 4	0.20	Down
Hindgut	2 ± 0	1 of 4	0.20	Down
Heart	2 ± 0	0 of 4	0.16	Down
Fat body	8 ± 4	2 of 4	0.54	None
Ovary	2 ± 0	0 of 4	0.20	Down
Testis	3 ± 1	2 of 4	0.20	Down
Male accessory glands	107 ± 7	4 of 4	7.10	Up
Virgin spermatheca	6 ± 1	0 of 4	0.45	Down
Mated spermatheca	6 ± 1	1 of 4	0.42	Down
Adult carcass	24 ± 2	4 of 4	1.60	Up
Larval CNS	71 ± 1	4 of 4	4.66	Up
Larval Salivary gland	2 ± 1	0 of 4	0.15	Down
Larval midgut	40 ± 1	4 of 4	2.68	Up
Larval tubule	6 ± 1	3 of 4	0.40	Down
Larval hindgut	4 ± 1	1 of 4	0.30	Down
Larval fat body	4 ± 1	0 of 4	0.30	Down
Larval trachea	12 ± 2	4 of 4	0.83	None
Larval carcass	50 ± 4	4 of 4	3.32	Up
S2 cells (growing)	2 ± 0	0 of 4	0.17	Down
Whole fly	15 ± 2	4 of 4

Looking for CG10605-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720