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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10621-RA through 18771 annotations produced 1 hits

selenocysteine methyltransferase (CG10621):

Annotation Number : CG10621
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032726
Gbrowse : chr2L:18952205-18954421 (-) // 100.0 //
Probeset : 1626086_at
Accessions : protein= NP_609920;, nucleotide= NM_136076;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred f
FlyMine data for FBgn0032726.
BDGP gene expression has embryonic in situ data for CG10621: 21 pix of staining in 4 body parts.
BioGrid reports that CG10621 interacts with CG12045 .
VDRC has 3 RNAi stocks for FBgn0032726 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 14 of 4 0.30Down
Head293 204 of 4 3.20Up
Eye177 344 of 4 1.94None
Thoracicoabdominal ganglion29 14 of 4 0.30Down
Salivary gland9 20 of 4 0.11Down
Crop10 10 of 4 0.10Down
Midgut248 84 of 4 2.70Up
Tubule1062 2064 of 411.60Up
Hindgut90 44 of 4 1.00None
Heart450 164 of 4 4.94Up
Fat body1152 3934 of 412.63Up
Ovary6 10 of 4 0.10Down
Testis6 10 of 4 0.10Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca2429 1454 of 426.62Up
Mated spermatheca1512 2234 of 416.57Up
Adult carcass561 664 of 4 6.20Up
Larval CNS20 24 of 4 0.22Down
Larval Salivary gland26 13 of 4 0.29Down
Larval midgut309 834 of 4 3.39None
Larval tubule1315 54 of 414.40Up
Larval hindgut57 164 of 4 0.62None
Larval fat body2072 3504 of 422.70Up
Larval trachea11 72 of 4 0.13Down
Larval carcass48 44 of 4 0.53Down
S2 cells (growing)7 10 of 4 0.08Down
Whole fly91 74 of 4

Looking for CG10621-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime