FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10621-RA through 18771 annotations produced 1 hits

selenocysteine methyltransferase (CG10621):

Annotation Number : CG10621
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032726
Gbrowse : chr2L:18952205-18954421 (-) // 100.0 //
Probeset : 1626086_at
Accessions : protein= NP_609920;, nucleotide= NM_136076;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred f
FlyMine data for FBgn0032726.
BDGP gene expression has embryonic in situ data for CG10621: 21 pix of staining in 4 body parts.
BioGrid reports that CG10621 interacts with CG12045 .
VDRC has 3 RNAi stocks for FBgn0032726 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	24 ± 1	4 of 4	0.30	Down
Head	293 ± 20	4 of 4	3.20	Up
Eye	177 ± 34	4 of 4	1.94	None
Thoracicoabdominal ganglion	29 ± 1	4 of 4	0.30	Down
Salivary gland	9 ± 2	0 of 4	0.11	Down
Crop	10 ± 1	0 of 4	0.10	Down
Midgut	248 ± 8	4 of 4	2.70	Up
Tubule	1062 ± 206	4 of 4	11.60	Up
Hindgut	90 ± 4	4 of 4	1.00	None
Heart	450 ± 16	4 of 4	4.94	Up
Fat body	1152 ± 393	4 of 4	12.63	Up
Ovary	6 ± 1	0 of 4	0.10	Down
Testis	6 ± 1	0 of 4	0.10	Down
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	2429 ± 145	4 of 4	26.62	Up
Mated spermatheca	1512 ± 223	4 of 4	16.57	Up
Adult carcass	561 ± 66	4 of 4	6.20	Up
Larval CNS	20 ± 2	4 of 4	0.22	Down
Larval Salivary gland	26 ± 1	3 of 4	0.29	Down
Larval midgut	309 ± 83	4 of 4	3.39	None
Larval tubule	1315 ± 5	4 of 4	14.40	Up
Larval hindgut	57 ± 16	4 of 4	0.62	None
Larval fat body	2072 ± 350	4 of 4	22.70	Up
Larval trachea	11 ± 7	2 of 4	0.13	Down
Larval carcass	48 ± 4	4 of 4	0.53	Down
S2 cells (growing)	7 ± 1	0 of 4	0.08	Down
Whole fly	91 ± 7	4 of 4

Looking for CG10621-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720