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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10626-RA through 18771 annotations produced 1 hits



Drosokinin receptor (Lkr):

Annotation Number : CG10626
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035610
Gbrowse : chr3L:5505520-5522441 (-) // 99.86 //
Probeset : 1631100_at
Accessions : protein= NP_647968;, nucleotide= NM_139711;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0035610.
BDGP gene expression has embryonic in situ data for CG10626: 13 pix of staining in 4 body parts.
Homophila reports that CG10626 is a close match (6e-11) to human gene LAH3;P2RY5;P2Y5 (NP_005758), a gene associated with Hypotrichosis, localized, autosomal recessive, 3, 611452 (3);Woolly hair, autosomal recessive, 278150 (3).
TRiP has 1 RNAi stocks for FBgn0035610 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035610 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 ± 24 of 4 8.10Up
Head22 ± 14 of 4 2.30Up
Eye4 ± 10 of 4 0.44None
Thoracicoabdominal ganglion108 ± 44 of 411.30Up
Salivary gland5 ± 20 of 4 0.57None
Crop6 ± 00 of 4 0.60Down
Midgut5 ± 10 of 4 0.60None
Tubule348 ± 444 of 436.20Up
Hindgut57 ± 64 of 4 6.00Up
Heart3 ± 10 of 4 0.41Down
Fat body8 ± 21 of 4 0.85None
Ovary3 ± 11 of 4 0.40Down
Testis6 ± 23 of 4 0.70None
Male accessory glands4 ± 20 of 4 0.50None
Virgin spermatheca22 ± 14 of 4 2.31Up
Mated spermatheca26 ± 34 of 4 2.78Up
Adult carcass4 ± 20 of 4 0.50None
Larval CNS78 ± 54 of 4 8.13Up
Larval Salivary gland7 ± 21 of 4 0.73None
Larval midgut24 ± 34 of 4 2.55Up
Larval tubule348 ± 74 of 436.20Up
Larval hindgut665 ± 604 of 469.15Up
Larval fat body4 ± 10 of 4 0.50None
Larval trachea5 ± 21 of 4 0.56None
Larval carcass18 ± 34 of 4 1.95None
S2 cells (growing)1 ± 00 of 4 0.17Down
Whole fly9 ± 04 of 4

Looking for CG10626-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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