FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10627-RA through 18771 annotations produced 1 hits

(CG10627):

Annotation Number : CG10627
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036298
Gbrowse : chr3L:12520313-12523304 (-) // 100.0 //
Probeset : 1638994_at
Accessions : protein= NP_001034005; /// NP_648588; /// NP_648659;, nucleotide= NM_001038916; /// NM_140331; /// NM_140402;
Pathway : 0070461 // SAGA-type complex // inferred from direct assay
Interpro : "0000287 // magnesium ion binding // inferred from electronic annotation /// 0004610 // phosphoacetylglucosamine mutase
FlyMine data for FBgn0036298.
BDGP gene expression has embryonic in situ data for CG10627: 34 pix of staining in 21 body parts.
BioGrid reports that CG10627 interacts with CG5870 CG11628 CG18627 CG9075 .
VDRC has 2 RNAi stocks for FBgn0036298 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	140 ± 2	4 of 4	0.50	Down
Head	141 ± 5	4 of 4	0.50	Down
Eye	82 ± 2	4 of 4	0.31	Down
Thoracicoabdominal ganglion	168 ± 1	4 of 4	0.60	Down
Salivary gland	229 ± 20	4 of 4	0.85	None
Crop	280 ± 5	4 of 4	1.00	None
Midgut	741 ± 39	4 of 4	2.70	Up
Tubule	1008 ± 35	4 of 4	3.70	Up
Hindgut	253 ± 9	4 of 4	0.90	None
Heart	188 ± 12	4 of 4	0.70	Down
Fat body	223 ± 14	4 of 4	0.83	Down
Ovary	331 ± 3	4 of 4	1.20	Up
Testis	22 ± 1	4 of 4	0.10	Down
Male accessory glands	143 ± 5	4 of 4	0.50	Down
Virgin spermatheca	159 ± 14	4 of 4	0.59	Down
Mated spermatheca	242 ± 20	4 of 4	0.90	None
Adult carcass	145 ± 13	4 of 4	0.50	Down
Larval CNS	250 ± 12	4 of 4	0.93	None
Larval Salivary gland	950 ± 24	4 of 4	3.51	Up
Larval midgut	612 ± 19	4 of 4	2.26	Up
Larval tubule	758 ± 41	4 of 4	2.80	Up
Larval hindgut	479 ± 18	4 of 4	1.77	Up
Larval fat body	198 ± 21	4 of 4	0.70	Down
Larval trachea	410 ± 17	4 of 4	1.52	Up
Larval carcass	550 ± 41	4 of 4	2.03	Up
S2 cells (growing)	182 ± 3	4 of 4	0.68	Down
Whole fly	270 ± 9	4 of 4

Looking for CG10627-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720