FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10637-RA through 18771 annotations produced 1 hits

Numb-associated kinase (Nak):

Annotation Number : CG10637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015772
Gbrowse : chr2L:18957918-18968721 (-) // 100.0 //
Probeset : 1632485_a_at
Accessions : protein= NP_477165; /// NP_477166; /// NP_995725;, nucleotide= NM_057817; /// NM_057818; /// NM_206003;
Interpro : 0004672 // protein kinase activity // non-traceable author statement /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0015772.
BDGP gene expression has embryonic in situ data for Nak: 18 pix of staining in 8 body parts.
BioGrid reports that CG10637 interacts with CG3779 CG3779 CG3779 .
TRiP has 2 RNAi stocks for FBgn0015772 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015772 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	240 ± 5	4 of 4	3.40	Up
Head	81 ± 3	4 of 4	1.20	Up
Eye	125 ± 12	4 of 4	1.79	Up
Thoracicoabdominal ganglion	310 ± 15	4 of 4	4.40	Up
Salivary gland	162 ± 20	4 of 4	2.32	Up
Crop	143 ± 10	4 of 4	2.10	Up
Midgut	54 ± 3	4 of 4	0.80	Down
Tubule	130 ± 7	4 of 4	1.90	Up
Hindgut	125 ± 2	4 of 4	1.80	Up
Heart	129 ± 6	4 of 4	1.86	Up
Fat body	60 ± 10	4 of 4	0.87	None
Ovary	183 ± 9	4 of 4	2.60	Up
Testis	50 ± 4	4 of 4	0.70	Down
Male accessory glands	116 ± 2	4 of 4	1.70	Up
Virgin spermatheca	49 ± 3	4 of 4	0.71	Down
Mated spermatheca	47 ± 2	4 of 4	0.67	Down
Adult carcass	88 ± 9	4 of 4	1.30	None
Larval CNS	132 ± 12	4 of 4	1.89	Up
Larval Salivary gland	151 ± 4	4 of 4	2.16	Up
Larval midgut	65 ± 3	4 of 4	0.94	None
Larval tubule	306 ± 16	4 of 4	4.40	Up
Larval hindgut	106 ± 2	4 of 4	1.52	Up
Larval fat body	79 ± 7	4 of 4	1.10	None
Larval trachea	181 ± 31	4 of 4	2.60	Up
Larval carcass	101 ± 5	4 of 4	1.45	Up
S2 cells (growing)	49 ± 2	4 of 4	0.71	Down
Whole fly	69 ± 1	4 of 4

Looking for CG10637-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720