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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10639-RA through 18771 annotations produced 1 hits



(CG10639):

Annotation Number : CG10639
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032729
Gbrowse : chr2L:18971990-18974448 (-) // 100.0 //
Probeset : 1624003_at
Accessions : protein= NP_609923;, nucleotide= NM_136079;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0032729.
Homophila reports that CG10639 is a close match (2e-125) to human gene C14orf160;L2HGDH (NP_079160), a gene associated with L-2-hydroxyglutaric aciduria, 236792 (3).
VDRC has 2 RNAi stocks for FBgn0032729 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain311 44 of 4 1.20Up
Head407 174 of 4 1.60Up
Eye322 44 of 4 1.28Up
Thoracicoabdominal ganglion324 64 of 4 1.30Up
Salivary gland811 64 of 4 3.23Up
Crop455 144 of 4 1.80Up
Midgut372 64 of 4 1.50Up
Tubule1212 214 of 4 4.80Up
Hindgut881 94 of 4 3.50Up
Heart533 164 of 4 2.12Up
Fat body877 1204 of 4 3.49Up
Ovary163 114 of 4 0.70Down
Testis612 184 of 4 2.40Up
Male accessory glands68 24 of 4 0.30Down
Virgin spermatheca1643 504 of 4 6.54Up
Mated spermatheca1224 984 of 4 4.88Up
Adult carcass505 194 of 4 2.00Up
Larval CNS432 424 of 4 1.72Up
Larval Salivary gland656 444 of 4 2.61Up
Larval midgut871 394 of 4 3.47Up
Larval tubule1742 634 of 4 6.90Up
Larval hindgut832 114 of 4 3.31Up
Larval fat body1556 1394 of 4 6.20Up
Larval trachea164 144 of 4 0.66Down
Larval carcass1287 1314 of 4 5.13Up
S2 cells (growing)420 44 of 4 1.67Up
Whole fly251 104 of 4

Looking for CG10639-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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