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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10641-RA through 18771 annotations produced 1 hits



(CG10641):

Annotation Number : CG10641
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032731
Gbrowse : chr2L:18977747-18987276 (-) // 100.0 //
Probeset : 1627515_at
Accessions : protein= NP_609925;, nucleotide= NM_136081;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0032731.
BDGP gene expression has embryonic in situ data for CG10641: 16 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0032731 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032731 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain503 154 of 4 2.70Up
Head317 154 of 4 1.70Up
Eye670 224 of 4 3.58Up
Thoracicoabdominal ganglion473 124 of 4 2.50Up
Salivary gland1569 604 of 4 8.39Up
Crop324 114 of 4 1.70Up
Midgut94 24 of 4 0.50Down
Tubule1028 1104 of 4 5.50Up
Hindgut131 54 of 4 0.70Down
Heart243 214 of 4 1.30None
Fat body174 254 of 4 0.93None
Ovary409 64 of 4 2.20Up
Testis54 24 of 4 0.30Down
Male accessory glands122 134 of 4 0.70Down
Virgin spermatheca248 294 of 4 1.33None
Mated spermatheca155 104 of 4 0.83None
Adult carcass132 34 of 4 0.70Down
Larval CNS540 384 of 4 2.89Up
Larval Salivary gland411 194 of 4 2.20Up
Larval midgut94 34 of 4 0.51Down
Larval tubule186 154 of 4 1.00None
Larval hindgut222 104 of 4 1.19None
Larval fat body103 194 of 4 0.60Down
Larval trachea343 454 of 4 1.84Up
Larval carcass336 344 of 4 1.80Up
S2 cells (growing)1819 434 of 4 9.73Up
Whole fly187 124 of 4

Looking for CG10641-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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