FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10650-RA through 18771 annotations produced 1 hits

(CG10650):

Annotation Number : CG10650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046302
Gbrowse : chr2L:18993611-18995930 (-) // 100.0 //
Probeset : 1641038_at
Accessions : protein= NP_609929;, nucleotide= NM_136085;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0046302.
BDGP gene expression has embryonic in situ data for BEST:GH09876: 10 pix of staining in 3 body parts.
BioGrid reports that CG10650 interacts with CG14578 CG10852 CG11607 CG13840 CG14307 CG15109 CG15771 CG3081 CG31006 CG31211 CG3187 CG32705 CG3474 CG4767 CG4798 CG4922 CG5923 CG5933 CG7835 CG8301 CG9283 CG9312 Dmel CG33975 CG9924 Dmel CG34113 CG17757 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	14 ± 2	2 of 4	0.10	Down
Head	11 ± 2	0 of 4	0.00	Down
Eye	2 ± 1	0 of 4	0.01	Down
Thoracicoabdominal ganglion	33 ± 1	4 of 4	0.10	Down
Salivary gland	1832 ± 73	4 of 4	6.77	Up
Crop	23 ± 5	2 of 4	0.10	Down
Midgut	2913 ± 30	4 of 4	10.80	Up
Tubule	855 ± 11	4 of 4	3.20	Up
Hindgut	537 ± 22	4 of 4	2.00	Up
Heart	4 ± 1	0 of 4	0.02	Down
Fat body	7 ± 6	0 of 4	0.03	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	173 ± 11	4 of 4	0.60	None
Male accessory glands	99 ± 5	4 of 4	0.40	Down
Virgin spermatheca	333 ± 27	4 of 4	1.23	None
Mated spermatheca	398 ± 50	4 of 4	1.47	None
Adult carcass	23 ± 1	1 of 4	0.10	Down
Larval CNS	5 ± 1	0 of 4	0.02	Down
Larval Salivary gland	706 ± 23	4 of 4	2.61	Up
Larval midgut	2844 ± 45	4 of 4	10.52	Up
Larval tubule	330 ± 9	4 of 4	1.20	None
Larval hindgut	684 ± 23	4 of 4	2.53	Up
Larval fat body	7 ± 3	0 of 4	0.00	Down
Larval trachea	71 ± 12	4 of 4	0.27	Down
Larval carcass	2 ± 0	0 of 4	0.01	Down
S2 cells (growing)	1 ± 0	0 of 4	0.00	Down
Whole fly	270 ± 40	4 of 4

Looking for CG10650-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720