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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10657-RA through 18771 annotations produced 1 hits



retinaldehyde-binding related protein (CG10657):

Annotation Number : CG10657
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036289
Gbrowse : chr3L:12484924-12490298 (-) // 100.0 //
Probeset : 1630584_at
Accessions : protein= NP_648579;, nucleotide= NM_140322;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0036289.
BDGP gene expression has embryonic in situ data for CG10657: 9 pix of staining in 10 body parts.
Homophila reports that CG10657 is a close match (3e-25) to human gene RLBP1 (NP_000317), a gene associated with Bothnia retinal dystrophy, 607475 (3);Fundus albipunctatus, 136880 (3);Newfoundland rod-cone dystrophy, 607476 (3);Retinitis pigmentosa, AR, 268000 (3);Retinitis punctata albescens, 136880 (3).
BioGrid reports that CG10657 interacts with CG6174 .
VDRC has 3 RNAi stocks for FBgn0036289 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 03 of 4 0.10Down
Head181 ± 84 of 4 1.80Up
Eye11 ± 11 of 4 0.11Down
Thoracicoabdominal ganglion9 ± 10 of 4 0.10Down
Salivary gland35 ± 52 of 4 0.36Down
Crop200 ± 64 of 4 2.00Up
Midgut7 ± 11 of 4 0.10Down
Tubule107 ± 244 of 4 1.10None
Hindgut383 ± 154 of 4 3.80Up
Heart5 ± 10 of 4 0.05Down
Fat body12 ± 10 of 4 0.12Down
Ovary3 ± 00 of 4 0.00Down
Testis8 ± 02 of 4 0.10Down
Male accessory glands12 ± 10 of 4 0.10Down
Virgin spermatheca51 ± 44 of 4 0.52None
Mated spermatheca64 ± 24 of 4 0.64None
Adult carcass24 ± 73 of 4 0.20Down
Larval CNS16 ± 24 of 4 0.17Down
Larval Salivary gland15 ± 21 of 4 0.16Down
Larval midgut17 ± 14 of 4 0.18Down
Larval tubule10 ± 11 of 4 0.10Down
Larval hindgut336 ± 224 of 4 3.37Up
Larval fat body11 ± 10 of 4 0.10Down
Larval trachea286 ± 104 of 4 2.87Up
Larval carcass67 ± 124 of 4 0.68None
S2 cells (growing)69 ± 24 of 4 0.70None
Whole fly99 ± 164 of 4

Looking for CG10657-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime