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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10674-RA through 18771 annotations produced 1 hits



(CG10674):

Annotation Number : CG10674
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035592
Gbrowse : chr3L:5128939-5129333 (-) // 100.0 //
Probeset : 1633210_at
Accessions : protein= NP_647950;, nucleotide= NM_139693;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035592.
BioGrid reports that CG10674 interacts with CG1544 .
VDRC has 2 RNAi stocks for FBgn0035592 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain220 ± 54 of 4 0.70Down
Head276 ± 94 of 4 0.90None
Eye502 ± 174 of 4 1.64Up
Thoracicoabdominal ganglion277 ± 64 of 4 0.90None
Salivary gland597 ± 374 of 4 1.95Up
Crop248 ± 44 of 4 0.80Down
Midgut496 ± 144 of 4 1.60Up
Tubule293 ± 114 of 4 1.00None
Hindgut287 ± 114 of 4 0.90None
Heart427 ± 84 of 4 1.40Up
Fat body385 ± 224 of 4 1.26Up
Ovary375 ± 114 of 4 1.20Up
Testis152 ± 94 of 4 0.50Down
Male accessory glands650 ± 144 of 4 2.10Up
Virgin spermatheca373 ± 214 of 4 1.22None
Mated spermatheca390 ± 254 of 4 1.27Up
Adult carcass331 ± 144 of 4 1.10None
Larval CNS280 ± 114 of 4 0.91None
Larval Salivary gland607 ± 264 of 4 1.98Up
Larval midgut259 ± 184 of 4 0.85None
Larval tubule336 ± 134 of 4 1.10None
Larval hindgut287 ± 84 of 4 0.94None
Larval fat body241 ± 204 of 4 0.80None
Larval trachea380 ± 224 of 4 1.24Up
Larval carcass251 ± 124 of 4 0.82Down
S2 cells (growing)507 ± 104 of 4 1.66Up
Whole fly306 ± 164 of 4

Looking for CG10674-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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