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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10685-RA through 18771 annotations produced 1 hits



CG10685 (l(2)37Cg):

Annotation Number : CG10685
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086447
Gbrowse : chr2L:19133051-19133426 (-) // 100.0 //
Probeset : 1632654_at
Accessions : protein= NP_609950;, nucleotide= NM_136106;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005666 // DNA-directed RNA polymerase III complex // infe
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inf
FlyMine data for FBgn0086447.
BioGrid reports that CG10685 interacts with CG1138 CG13957 CG14471 CG3756 CG4279 CG11842 CG13510 CG31357 CG3213 CG7176 CG1524 CG1527 .
VDRC has 2 RNAi stocks for FBgn0086447 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 24 of 4 0.50Down
Head104 84 of 4 0.70Down
Eye156 144 of 4 1.05None
Thoracicoabdominal ganglion89 54 of 4 0.60Down
Salivary gland117 94 of 4 0.79Down
Crop128 54 of 4 0.90Down
Midgut87 54 of 4 0.60Down
Tubule118 124 of 4 0.80Down
Hindgut95 14 of 4 0.60Down
Heart114 64 of 4 0.77Down
Fat body141 264 of 4 0.95None
Ovary263 54 of 4 1.80Up
Testis46 24 of 4 0.30Down
Male accessory glands248 44 of 4 1.70Up
Virgin spermatheca149 124 of 4 1.00None
Mated spermatheca218 94 of 4 1.47Up
Adult carcass91 94 of 4 0.60Down
Larval CNS208 114 of 4 1.40Up
Larval Salivary gland167 104 of 4 1.13None
Larval midgut68 74 of 4 0.46Down
Larval tubule49 34 of 4 0.30Down
Larval hindgut137 154 of 4 0.92None
Larval fat body59 24 of 4 0.40Down
Larval trachea209 304 of 4 1.40Up
Larval carcass139 234 of 4 0.93None
S2 cells (growing)164 34 of 4 1.10None
Whole fly149 54 of 4

Looking for CG10685-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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