FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10685-RA through 18771 annotations produced 1 hits

CG10685 (l(2)37Cg):

Annotation Number : CG10685
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086447
Gbrowse : chr2L:19133051-19133426 (-) // 100.0 //
Probeset : 1632654_at
Accessions : protein= NP_609950;, nucleotide= NM_136106;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005666 // DNA-directed RNA polymerase III complex // infe
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inf
FlyMine data for FBgn0086447.
BioGrid reports that CG10685 interacts with CG1138 CG13957 CG14471 CG3756 CG4279 CG11842 CG13510 CG31357 CG3213 CG7176 CG1524 CG1527 .
VDRC has 2 RNAi stocks for FBgn0086447 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	74 ± 2	4 of 4	0.50	Down
Head	104 ± 8	4 of 4	0.70	Down
Eye	156 ± 14	4 of 4	1.05	None
Thoracicoabdominal ganglion	89 ± 5	4 of 4	0.60	Down
Salivary gland	117 ± 9	4 of 4	0.79	Down
Crop	128 ± 5	4 of 4	0.90	Down
Midgut	87 ± 5	4 of 4	0.60	Down
Tubule	118 ± 12	4 of 4	0.80	Down
Hindgut	95 ± 1	4 of 4	0.60	Down
Heart	114 ± 6	4 of 4	0.77	Down
Fat body	141 ± 26	4 of 4	0.95	None
Ovary	263 ± 5	4 of 4	1.80	Up
Testis	46 ± 2	4 of 4	0.30	Down
Male accessory glands	248 ± 4	4 of 4	1.70	Up
Virgin spermatheca	149 ± 12	4 of 4	1.00	None
Mated spermatheca	218 ± 9	4 of 4	1.47	Up
Adult carcass	91 ± 9	4 of 4	0.60	Down
Larval CNS	208 ± 11	4 of 4	1.40	Up
Larval Salivary gland	167 ± 10	4 of 4	1.13	None
Larval midgut	68 ± 7	4 of 4	0.46	Down
Larval tubule	49 ± 3	4 of 4	0.30	Down
Larval hindgut	137 ± 15	4 of 4	0.92	None
Larval fat body	59 ± 2	4 of 4	0.40	Down
Larval trachea	209 ± 30	4 of 4	1.40	Up
Larval carcass	139 ± 23	4 of 4	0.93	None
S2 cells (growing)	164 ± 3	4 of 4	1.10	None
Whole fly	149 ± 5	4 of 4

Looking for CG10685-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720