FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10686-RA through 18771 annotations produced 1 hits

trailer hitch (tral):

Annotation Number : CG10686
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041775
Gbrowse : chr3L:12508126-12512807 (+) // 99.86 //
Probeset : 1625080_at
Accessions : protein= NP_648585;, nucleotide= NM_140328;
Pathway : 0005667 // transcription factor complex // inferred from physical interaction /// 0005783 // endoplasmic reticulum // in
FlyMine data for FBgn0041775.
BioGrid reports that CG10686 interacts with CG10918 CG11327 CG12034 CG12433 CG14667 CG17286 CG17870 CG3880 CG4998 CG5215 CG5837 .
TRiP has 2 RNAi stocks for FBgn0041775 available for purchase.
VDRC has 1 RNAi stocks for FBgn0041775 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	287 ± 16	4 of 4	0.20	Down
Head	174 ± 14	4 of 4	0.10	Down
Eye	321 ± 20	4 of 4	0.24	Down
Thoracicoabdominal ganglion	295 ± 20	4 of 4	0.20	Down
Salivary gland	163 ± 26	4 of 4	0.12	Down
Crop	260 ± 14	4 of 4	0.20	Down
Midgut	130 ± 1	4 of 4	0.10	Down
Tubule	68 ± 9	4 of 4	0.10	Down
Hindgut	201 ± 12	4 of 4	0.20	Down
Heart	243 ± 6	4 of 4	0.19	Down
Fat body	184 ± 23	4 of 4	0.14	Down
Ovary	2073 ± 31	4 of 4	1.60	Up
Testis	337 ± 15	4 of 4	0.30	Down
Male accessory glands	197 ± 8	4 of 4	0.10	Down
Virgin spermatheca	84 ± 6	4 of 4	0.06	Down
Mated spermatheca	75 ± 1	4 of 4	0.06	Down
Adult carcass	256 ± 44	4 of 4	0.20	Down
Larval CNS	444 ± 15	4 of 4	0.34	Down
Larval Salivary gland	273 ± 11	4 of 4	0.21	Down
Larval midgut	156 ± 6	4 of 4	0.12	Down
Larval tubule	247 ± 20	4 of 4	0.20	Down
Larval hindgut	224 ± 12	4 of 4	0.17	Down
Larval fat body	389 ± 4	4 of 4	0.30	Down
Larval trachea	373 ± 42	4 of 4	0.28	Down
Larval carcass	259 ± 17	4 of 4	0.20	Down
S2 cells (growing)	267 ± 7	4 of 4	0.20	Down
Whole fly	1315 ± 76	4 of 4

Looking for CG10686-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720