FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10695-RA through 18771 annotations produced 1 hits

Protein interacting with APP tail-1 (Pat1):

Annotation Number : CG10695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029878
Gbrowse : chrX:6484810-6490663 (+) // 99.88 //
Probeset : 1631412_at
Accessions : protein= NP_572328;, nucleotide= NM_132100;
Pathway : engulfment // inferred from mutant phenotype /// 0007018 // microtubule-based movement // inferred from sequence or str
Interpro : 0005871 // kinesin complex // inferred from sequence or structural similarity
FlyMine data for FBgn0029878.
BDGP gene expression has embryonic in situ data for CG10695: 4 pix of staining in 1 body parts.
BioGrid reports that CG10695 interacts with CG17658 CG6470 CG6511 CG7761 CG10979 CG11896 CG1244 CG12692 CG14506 CG14534 CG15707 CG1632 CG17085 CG17255 CG2199 CG30101 CG4004 CG4328 CG4394 CG4887 CG5445 CG33484 CG5746 CG7867 CG8086 CG8567 CG9277 CG9282 .
VDRC has 2 RNAi stocks for FBgn0029878 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	396 ± 8	4 of 4	1.90	Up
Head	178 ± 18	4 of 4	0.90	None
Eye	190 ± 1	4 of 4	0.92	None
Thoracicoabdominal ganglion	317 ± 8	4 of 4	1.50	Up
Salivary gland	576 ± 33	4 of 4	2.78	Up
Crop	169 ± 5	4 of 4	0.80	None
Midgut	141 ± 4	4 of 4	0.70	Down
Tubule	343 ± 41	4 of 4	1.70	Up
Hindgut	221 ± 5	4 of 4	1.10	None
Heart	147 ± 11	4 of 4	0.71	Down
Fat body	167 ± 37	4 of 4	0.81	None
Ovary	240 ± 17	4 of 4	1.20	None
Testis	49 ± 3	4 of 4	0.20	Down
Male accessory glands	204 ± 15	4 of 4	1.00	None
Virgin spermatheca	139 ± 3	4 of 4	0.67	Down
Mated spermatheca	162 ± 9	4 of 4	0.78	Down
Adult carcass	176 ± 8	4 of 4	0.90	None
Larval CNS	377 ± 52	4 of 4	1.82	Up
Larval Salivary gland	185 ± 9	4 of 4	0.89	None
Larval midgut	112 ± 7	4 of 4	0.54	Down
Larval tubule	640 ± 18	4 of 4	3.10	Up
Larval hindgut	279 ± 10	4 of 4	1.35	Up
Larval fat body	575 ± 70	4 of 4	2.80	Up
Larval trachea	289 ± 36	4 of 4	1.40	Up
Larval carcass	298 ± 16	4 of 4	1.44	Up
S2 cells (growing)	581 ± 7	4 of 4	2.81	Up
Whole fly	207 ± 12	4 of 4

Looking for CG10695-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720