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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10697-RB through 18771 annotations produced 1 hits



Dopa decarboxylase (Ddc):

Annotation Number : CG10697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000422
Gbrowse : chr2L:19116479-19120300 (-) // 100.0 //
Probeset : 1639320_a_at
Accessions : protein= NP_523600; /// NP_724163; /// NP_724164;, nucleotide= NM_078876; /// NM_165279; /// NM_165280;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004058 // aromatic-L-amino-acid decarboxylase
FlyMine data for FBgn0000422.
BDGP gene expression has embryonic in situ data for Ddc: 20 pix of staining in 5 body parts.
Homophila reports that CG10697 is a close match (1e-25) to human gene GAD1;SCP (NP_000808), a gene associated with Cerebral palsy, spastic, symmetric, autosomal recessive, 603513 (3).
BioGrid reports that CG10697 interacts with CG2950 CG10118 CG10118 .
TRiP has 1 RNAi stocks for FBgn0000422 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000422 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain800 ± 184 of 411.90Up
Head207 ± 64 of 4 3.10Up
Eye230 ± 74 of 4 3.44Up
Thoracicoabdominal ganglion564 ± 214 of 4 8.40Up
Salivary gland30 ± 20 of 4 0.46Down
Crop63 ± 44 of 4 0.90None
Midgut93 ± 74 of 4 1.40Up
Tubule23 ± 62 of 4 0.30Down
Hindgut75 ± 24 of 4 1.10None
Heart22 ± 33 of 4 0.34Down
Fat body25 ± 83 of 4 0.38Down
Ovary5 ± 00 of 4 0.10Down
Testis91 ± 64 of 4 1.40Up
Male accessory glands14 ± 21 of 4 0.20Down
Virgin spermatheca30 ± 34 of 4 0.45Down
Mated spermatheca43 ± 24 of 4 0.64Down
Adult carcass232 ± 114 of 4 3.50Up
Larval CNS147 ± 244 of 4 2.20Up
Larval Salivary gland20 ± 13 of 4 0.30Down
Larval midgut42 ± 34 of 4 0.64Down
Larval tubule7 ± 10 of 4 0.10Down
Larval hindgut217 ± 484 of 4 3.24None
Larval fat body20 ± 33 of 4 0.30Down
Larval trachea552 ± 3734 of 4 8.24None
Larval carcass1874 ± 5084 of 427.98Up
S2 cells (growing)8 ± 02 of 4 0.13Down
Whole fly67 ± 44 of 4

Looking for CG10697-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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