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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10700-RA through 18771 annotations produced 1 hits



(CG10700):

Annotation Number : CG10700
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032754
Gbrowse : chr2L:19077375-19078995 (-) // 100.0 //
Probeset : 1632920_at
Accessions : protein= NP_609942;, nucleotide= NM_136098;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
Interpro : "0008656 // caspase activator activity // inferred from sequence or structural similarity /// 0008937 // ferredoxin redu
FlyMine data for FBgn0032754.
BioGrid reports that CG10700 interacts with CG7196 .
VDRC has 1 RNAi stocks for FBgn0032754 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.70None
Head1 00 of 4 1.00None
Eye0 00 of 4 0.33None
Thoracicoabdominal ganglion0 00 of 4 0.40None
Salivary gland7 40 of 4 4.53None
Crop1 00 of 4 1.10None
Midgut2 00 of 4 1.60None
Tubule2 00 of 4 1.50Up
Hindgut1 00 of 4 1.20None
Heart3 10 of 4 1.85None
Fat body2 20 of 4 1.73None
Ovary1 00 of 4 0.70None
Testis7 22 of 4 4.60None
Male accessory glands2 10 of 4 1.50None
Virgin spermatheca1 00 of 4 0.94None
Mated spermatheca2 10 of 4 1.58None
Adult carcass2 00 of 4 1.30None
Larval CNS1 10 of 4 0.91None
Larval Salivary gland0 00 of 4 0.42None
Larval midgut2 00 of 4 1.55None
Larval tubule4 00 of 4 2.40None
Larval hindgut0 00 of 4 0.45None
Larval fat body6 20 of 4 4.10None
Larval trachea1 00 of 4 0.67None
Larval carcass3 10 of 4 2.39None
S2 cells (growing)0 00 of 4 0.59None
Whole fly1 00 of 4

Looking for CG10700-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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