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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10710-RA through 18771 annotations produced 1 hits



(CG10710):

Annotation Number : CG10710
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036377
Gbrowse : chr3L:13509372-13512701 (-) // 100.0 //
Probeset : 1631999_at
Accessions : protein= NP_648662;, nucleotide= NM_140405;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036377.
BDGP gene expression has embryonic in situ data for CG10710: 15 pix of staining in 3 body parts.
BioGrid reports that CG10710 interacts with CG11796 CG14084 CG5792 CG4328 CG7583 CG9511 .
VDRC has 1 RNAi stocks for FBgn0036377 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 02 of 4 1.30None
Head6 ± 10 of 4 0.90None
Eye4 ± 10 of 4 0.58None
Thoracicoabdominal ganglion7 ± 20 of 4 0.90None
Salivary gland2 ± 00 of 4 0.28Down
Crop49 ± 14 of 4 6.40Up
Midgut1 ± 00 of 4 0.20Down
Tubule1 ± 00 of 4 0.20Down
Hindgut26 ± 13 of 4 3.50Up
Heart11 ± 22 of 4 1.47None
Fat body0 ± 00 of 4 0.11Down
Ovary2 ± 00 of 4 0.30Down
Testis2 ± 01 of 4 0.30Down
Male accessory glands11 ± 20 of 4 1.50None
Virgin spermatheca2 ± 00 of 4 0.26Down
Mated spermatheca3 ± 10 of 4 0.47None
Adult carcass17 ± 21 of 4 2.20Up
Larval CNS3 ± 20 of 4 0.49None
Larval Salivary gland1 ± 10 of 4 0.25Down
Larval midgut3 ± 00 of 4 0.41Down
Larval tubule1 ± 00 of 4 0.20Down
Larval hindgut32 ± 44 of 4 4.23Up
Larval fat body6 ± 20 of 4 0.90None
Larval trachea6 ± 41 of 4 0.85None
Larval carcass88 ± 164 of 411.44Up
S2 cells (growing)1 ± 00 of 4 0.19Down
Whole fly7 ± 11 of 4

Looking for CG10710-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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