FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10718-RA through 18771 annotations produced 1 hits

tiovivo (neb):

Annotation Number : CG10718
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004374
Gbrowse : chr2L:20075755-20089706 (+) // 100.0 //
Probeset : 1637197_at
Accessions : protein= NP_476817;, nucleotide= NM_057469;
Pathway : embryonic // inferred from mutant phenotype /// 0048477 // oogenesis // traceable author statement /// 0051726 // regul
Interpro : 0005871 // kinesin complex // inferred from sequence or structural similarity /// 0005874 // microtubule // inferred fro
FlyMine data for FBgn0004374.
Homophila reports that CG10718 is a close match (5e-38) to human gene KIF5A;NKHC;SPG10 (NP_004975), a gene associated with Spastic paraplegia 10, 604187 (3).
BioGrid reports that CG10718 interacts with CG4717 CG1763 CG5753 .
TRiP has 1 RNAi stocks for FBgn0004374 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004374 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 1	0 of 4	0.10	Down
Head	6 ± 1	0 of 4	0.10	Down
Eye	11 ± 0	3 of 4	0.14	Down
Thoracicoabdominal ganglion	16 ± 2	3 of 4	0.20	Down
Salivary gland	18 ± 8	0 of 4	0.22	Down
Crop	10 ± 1	0 of 4	0.10	Down
Midgut	6 ± 1	0 of 4	0.10	Down
Tubule	67 ± 8	4 of 4	0.80	None
Hindgut	35 ± 2	4 of 4	0.40	Down
Heart	23 ± 2	4 of 4	0.28	Down
Fat body	33 ± 2	4 of 4	0.41	Down
Ovary	174 ± 6	4 of 4	2.10	Up
Testis	236 ± 7	4 of 4	2.90	Up
Male accessory glands	11 ± 5	0 of 4	0.10	Down
Virgin spermatheca	16 ± 2	1 of 4	0.20	Down
Mated spermatheca	16 ± 2	0 of 4	0.20	Down
Adult carcass	32 ± 0	2 of 4	0.40	Down
Larval CNS	106 ± 4	4 of 4	1.30	Up
Larval Salivary gland	10 ± 3	0 of 4	0.13	Down
Larval midgut	29 ± 3	0 of 4	0.36	Down
Larval tubule	32 ± 2	4 of 4	0.40	Down
Larval hindgut	32 ± 4	4 of 4	0.39	Down
Larval fat body	57 ± 11	3 of 4	0.70	None
Larval trachea	42 ± 6	4 of 4	0.52	Down
Larval carcass	25 ± 2	3 of 4	0.31	Down
S2 cells (growing)	77 ± 3	4 of 4	0.94	None
Whole fly	82 ± 7	4 of 4

Looking for CG10718-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720