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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10719-RA through 18771 annotations produced 1 hits



Brain Tumor (brat):

Annotation Number : CG10719
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010300
Gbrowse : chr2L:19133805-19172572 (+) // 100.0 //
Probeset : 1639217_s_at
Accessions : protein= NP_476945; /// NP_599129; /// NP_995726;, nucleotide= NM_057597; /// NM_134302; /// NM_206004;
Pathway : engulfment // inferred from mutant phenotype /// 0007402 // ganglion mother cell fate determination // inferred from mu
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /
FlyMine data for FBgn0010300.
BDGP gene expression has embryonic in situ data for brat: 18 pix of staining in 16 body parts.
BioGrid reports that CG10719 interacts with CG11505 CG6357 .
TRiP has 2 RNAi stocks for FBgn0010300 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010300 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 44 of 4 0.10Down
Head7 14 of 4 0.00Down
Eye6 03 of 4 0.04Down
Thoracicoabdominal ganglion14 24 of 4 0.10Down
Salivary gland13 41 of 4 0.08Down
Crop14 24 of 4 0.10Down
Midgut12 14 of 4 0.10Down
Tubule15 33 of 4 0.10Down
Hindgut7 04 of 4 0.00Down
Heart9 04 of 4 0.06Down
Fat body24 14 of 4 0.16Down
Ovary667 204 of 4 4.20Up
Testis8 04 of 4 0.10Down
Male accessory glands37 44 of 4 0.20Down
Virgin spermatheca20 24 of 4 0.13Down
Mated spermatheca22 34 of 4 0.14Down
Adult carcass16 23 of 4 0.10Down
Larval CNS292 534 of 4 1.84Up
Larval Salivary gland15 14 of 4 0.10Down
Larval midgut21 34 of 4 0.14Down
Larval tubule24 44 of 4 0.20Down
Larval hindgut28 34 of 4 0.18Down
Larval fat body73 54 of 4 0.50Down
Larval trachea16 64 of 4 0.11Down
Larval carcass46 104 of 4 0.29Down
S2 cells (growing)178 104 of 4 1.13None
Whole fly158 74 of 4

Looking for CG10719-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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