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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10721-RA through 18771 annotations produced 1 hits



(CG10721):

Annotation Number : CG10721
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032846
Gbrowse : chr2L:20091692-20093111 (+) // 100.0 //
Probeset : 1637249_at
Accessions : protein= NP_610023;, nucleotide= NM_136179;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from
FlyMine data for FBgn0032846.
BioGrid reports that CG10721 interacts with CG1503 CG5924 CG15693 CG3724 CG4045 CG4293 CG4533 .
VDRC has 3 RNAi stocks for FBgn0032846 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain134 24 of 4 2.80Up
Head65 24 of 4 1.40None
Eye139 64 of 4 2.90Up
Thoracicoabdominal ganglion151 64 of 4 3.10Up
Salivary gland96 74 of 4 2.01Up
Crop46 14 of 4 1.00None
Midgut67 34 of 4 1.40Up
Tubule68 44 of 4 1.40Up
Hindgut65 34 of 4 1.40None
Heart46 14 of 4 0.97None
Fat body51 74 of 4 1.06None
Ovary69 14 of 4 1.40Up
Testis73 44 of 4 1.50Up
Male accessory glands77 24 of 4 1.60Up
Virgin spermatheca57 04 of 4 1.19None
Mated spermatheca58 44 of 4 1.21None
Adult carcass61 64 of 4 1.30None
Larval CNS88 44 of 4 1.84Up
Larval Salivary gland97 44 of 4 2.02Up
Larval midgut78 54 of 4 1.62Up
Larval tubule191 14 of 4 4.00Up
Larval hindgut62 54 of 4 1.30None
Larval fat body110 124 of 4 2.30Up
Larval trachea63 64 of 4 1.33None
Larval carcass60 54 of 4 1.27None
S2 cells (growing)84 14 of 4 1.75Up
Whole fly48 64 of 4

Looking for CG10721-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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