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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10728-RA through 18771 annotations produced 1 hits



Valois (vls):

Annotation Number : CG10728
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003978
Gbrowse : chr2L:20064254-20065675 (-) // 100.0 //
Probeset : 1629176_at
Accessions : protein= NP_610019;, nucleotide= NM_136175;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0003978.
BioGrid reports that CG10728 interacts with CG8667 CG5637 .
TRiP has 1 RNAi stocks for FBgn0003978 available for purchase.
VDRC has 4 RNAi stocks for FBgn0003978 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 24 of 4 0.60Down
Head47 54 of 4 0.40Down
Eye30 14 of 4 0.23Down
Thoracicoabdominal ganglion90 34 of 4 0.70Down
Salivary gland38 41 of 4 0.29Down
Crop50 14 of 4 0.40Down
Midgut55 34 of 4 0.40Down
Tubule48 44 of 4 0.40Down
Hindgut46 14 of 4 0.40Down
Heart44 14 of 4 0.34Down
Fat body49 74 of 4 0.38Down
Ovary225 44 of 4 1.70Up
Testis71 34 of 4 0.50Down
Male accessory glands70 24 of 4 0.50Down
Virgin spermatheca34 24 of 4 0.27Down
Mated spermatheca45 34 of 4 0.34Down
Adult carcass47 44 of 4 0.40Down
Larval CNS199 124 of 4 1.53Up
Larval Salivary gland92 24 of 4 0.71Down
Larval midgut54 24 of 4 0.41Down
Larval tubule59 24 of 4 0.50Down
Larval hindgut71 44 of 4 0.55Down
Larval fat body59 44 of 4 0.50Down
Larval trachea136 24 of 4 1.04None
Larval carcass88 34 of 4 0.68Down
S2 cells (growing)271 84 of 4 2.07Up
Whole fly131 124 of 4

Looking for CG10728-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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