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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10750-RA through 18771 annotations produced 1 hits



(CG10750):

Annotation Number : CG10750
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032769
Gbrowse : chr2L:19300305-19301600 (+) // 100.0 //
Probeset : 1626622_at
Accessions : protein= NP_609955;, nucleotide= NM_136111;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032769.
BDGP gene expression has embryonic in situ data for CG10750: 4 pix of staining in 1 body parts.
BioGrid reports that CG10750 interacts with CG11656 CG17645 CG6251 CG6856 CG12985 CG4922 CG9160 .
VDRC has 3 RNAi stocks for FBgn0032769 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland15 ± 71 of 4 0.28Down
Crop4 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.04Down
Fat body19 ± 152 of 4 0.35Down
Ovary0 ± 00 of 4 0.00Down
Testis782 ± 224 of 414.20Up
Male accessory glands7 ± 20 of 4 0.10Down
Virgin spermatheca28 ± 24 of 4 0.51Down
Mated spermatheca25 ± 73 of 4 0.46Down
Adult carcass5 ± 20 of 4 0.10Down
Larval CNS27 ± 183 of 4 0.50None
Larval Salivary gland8 ± 11 of 4 0.15Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut3 ± 00 of 4 0.05Down
Larval fat body100 ± 483 of 4 1.80None
Larval trachea5 ± 61 of 4 0.11Down
Larval carcass2 ± 00 of 4 0.04Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly55 ± 54 of 4

Looking for CG10750-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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