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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10754-RA through 18771 annotations produced 1 hits



(CG10754):

Annotation Number : CG10754
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036314
Gbrowse : chr3L:12806127-12807103 (-) // 100.0 //
Probeset : 1624603_at
Accessions : protein= NP_648603;, nucleotide= NM_140346;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0007052 // mitotic spindle organization // infer
FlyMine data for FBgn0036314.
BDGP gene expression has embryonic in situ data for CG10754: 10 pix of staining in 7 body parts.
BioGrid reports that CG10754 interacts with CG12029 CG5514 .
VDRC has 2 RNAi stocks for FBgn0036314 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 54 of 4 1.00None
Head93 24 of 4 0.80Down
Eye103 44 of 4 0.89None
Thoracicoabdominal ganglion116 44 of 4 1.00None
Salivary gland162 44 of 4 1.39Up
Crop140 34 of 4 1.20Up
Midgut112 14 of 4 1.00None
Tubule102 24 of 4 0.90Down
Hindgut140 34 of 4 1.20Up
Heart83 34 of 4 0.71Down
Fat body95 84 of 4 0.81Down
Ovary202 44 of 4 1.70Up
Testis84 54 of 4 0.70Down
Male accessory glands215 94 of 4 1.80Up
Virgin spermatheca74 24 of 4 0.64Down
Mated spermatheca87 14 of 4 0.75Down
Adult carcass88 54 of 4 0.80Down
Larval CNS348 364 of 4 2.98Up
Larval Salivary gland205 144 of 4 1.76Up
Larval midgut85 44 of 4 0.73Down
Larval tubule141 54 of 4 1.20Up
Larval hindgut157 14 of 4 1.35Up
Larval fat body131 64 of 4 1.10None
Larval trachea164 334 of 4 1.41None
Larval carcass158 34 of 4 1.36Up
S2 cells (growing)301 74 of 4 2.58Up
Whole fly116 34 of 4

Looking for CG10754-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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