FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG10789-RA through 18771 annotations produced 1 hits

new glue 4 (ng4):

Annotation Number : CG10789
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010296
Gbrowse : chrX:3137983-3138221 (-) // 100.0 //
Probeset : 1631353_at
Accessions : protein= NP_476944;, nucleotide= NM_057596;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005198 // structural molecule activity // non-traceable author statement
FlyMine data for FBgn0010296.
BioGrid reports that CG10789 interacts with Dmel CG34380 .
VDRC has 5 RNAi stocks for FBgn0010296 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	2.00	None
Head	2 ± 0	0 of 4	3.60	None
Eye	2 ± 0	1 of 4	2.93	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	2.70	None
Salivary gland	5 ± 1	0 of 4	7.77	None
Crop	2 ± 1	0 of 4	2.70	None
Midgut	1 ± 0	0 of 4	2.00	None
Tubule	1 ± 0	0 of 4	2.30	Up
Hindgut	1 ± 0	0 of 4	1.40	None
Heart	2 ± 0	0 of 4	3.90	None
Fat body	3 ± 2	0 of 4	5.20	None
Ovary	0 ± 0	0 of 4	0.90	None
Testis	0 ± 0	0 of 4	0.60	None
Male accessory glands	1 ± 0	0 of 4	2.30	Up
Virgin spermatheca	1 ± 0	0 of 4	2.20	None
Mated spermatheca	2 ± 0	0 of 4	2.83	None
Adult carcass	5 ± 1	0 of 4	6.80	Up
Larval CNS	1 ± 0	0 of 4	1.37	None
Larval Salivary gland	28 ± 4	4 of 4	38.23	Up
Larval midgut	1 ± 0	0 of 4	2.20	None
Larval tubule	0 ± 0	0 of 4	0.90	None
Larval hindgut	2 ± 0	0 of 4	3.43	None
Larval fat body	1 ± 0	0 of 4	1.40	None
Larval trachea	2 ± 2	0 of 4	3.20	None
Larval carcass	3 ± 1	0 of 4	4.03	None
S2 cells (growing)	0 ± 0	0 of 4	0.87	None
Whole fly	0 ± 0	0 of 4

Looking for CG10789-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720