Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10808-RA through 18771 annotations produced 1 hits



synaptogyrin (synaptogyrin):

Annotation Number : CG10808
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033876
Gbrowse : chr2R:9729254-9733757 (-) // 100.0 //
Probeset : 1639431_at
Accessions : protein= NP_610908;, nucleotide= NM_137064;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0033876.
BDGP gene expression has embryonic in situ data for synaptogyrin: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0033876 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033876 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1936 ± 314 of 421.80Up
Head988 ± 674 of 411.10Up
Eye2348 ± 1714 of 426.47Up
Thoracicoabdominal ganglion1798 ± 364 of 420.30Up
Salivary gland11 ± 60 of 4 0.13Down
Crop4 ± 10 of 4 0.00Down
Midgut7 ± 10 of 4 0.10Down
Tubule6 ± 10 of 4 0.10Down
Hindgut102 ± 44 of 4 1.10None
Heart6 ± 12 of 4 0.07Down
Fat body12 ± 31 of 4 0.14Down
Ovary1 ± 00 of 4 0.00Down
Testis6 ± 10 of 4 0.10Down
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca6 ± 10 of 4 0.07Down
Adult carcass25 ± 22 of 4 0.30Down
Larval CNS803 ± 514 of 4 9.06Up
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut3 ± 00 of 4 0.04Down
Larval fat body4 ± 10 of 4 0.10Down
Larval trachea28 ± 512 of 4 0.32None
Larval carcass8 ± 10 of 4 0.09Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly88 ± 94 of 4

Looking for CG10808-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime