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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10811-RA through 18771 annotations produced 1 hits



translation initiation factor eIF4G (eIF4G):

Annotation Number : CG10811
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023213
Gbrowse : chr4:935910-951347 (-) // 100.0 //
Probeset : 1637560_at
Accessions : protein= NP_001096852; /// NP_001137857; /// NP_524640;, nucleotide= NM_001103382; /// NM_001144385; /// NM_079901;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity /// 0016281 // eukaryotic translation initiation f
Interpro : 0000340 // RNA 7-methylguanosine cap binding // inferred from direct assay /// 0003743 // translation initiation factor
FlyMine data for FBgn0023213.
BDGP gene expression has embryonic in situ data for eIF-4G: 4 pix of staining in 1 body parts.
BioGrid reports that CG10811 interacts with CG8268 CG8780 CG6147 .
TRiP has 1 RNAi stocks for FBgn0023213 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023213 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain807 ± 284 of 4 1.20Up
Head568 ± 444 of 4 0.90None
Eye534 ± 324 of 4 0.82Down
Thoracicoabdominal ganglion672 ± 254 of 4 1.00None
Salivary gland1581 ± 664 of 4 2.43Up
Crop868 ± 84 of 4 1.30Up
Midgut942 ± 254 of 4 1.50Up
Tubule1909 ± 424 of 4 2.90Up
Hindgut677 ± 274 of 4 1.00None
Heart998 ± 514 of 4 1.54Up
Fat body1554 ± 704 of 4 2.39Up
Ovary1176 ± 154 of 4 1.80Up
Testis162 ± 44 of 4 0.30Down
Male accessory glands1714 ± 794 of 4 2.60Up
Virgin spermatheca1788 ± 404 of 4 2.75Up
Mated spermatheca2122 ± 844 of 4 3.27Up
Adult carcass741 ± 544 of 4 1.10None
Larval CNS1241 ± 1054 of 4 1.91Up
Larval Salivary gland2815 ± 554 of 4 4.33Up
Larval midgut1285 ± 424 of 4 1.98Up
Larval tubule1565 ± 574 of 4 2.40Up
Larval hindgut1156 ± 404 of 4 1.78Up
Larval fat body814 ± 694 of 4 1.30None
Larval trachea1059 ± 2044 of 4 1.63Up
Larval carcass1404 ± 1094 of 4 2.16Up
S2 cells (growing)748 ± 184 of 4 1.15Up
Whole fly649 ± 164 of 4

Looking for CG10811-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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