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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1082-RA through 18771 annotations produced 1 hits



fragment C (alpha-Est4):

Annotation Number : CG1082
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015572
Gbrowse : chr3R:3362391-3364313 (-) // 100.0 //
Probeset : 1631277_at
Accessions : protein= NP_524266;, nucleotide= NM_079542;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0015572.
BDGP gene expression has embryonic in situ data for alpha-Est4: 10 pix of staining in 2 body parts.
Homophila reports that CG1082 is a close match (9e-19) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
VDRC has 2 RNAi stocks for FBgn0015572 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 12 of 4 0.30Down
Head10 ± 13 of 4 0.60Down
Eye8 ± 22 of 4 0.46Down
Thoracicoabdominal ganglion6 ± 12 of 4 0.30Down
Salivary gland31 ± 64 of 4 1.69None
Crop29 ± 24 of 4 1.60Up
Midgut93 ± 94 of 4 5.10Up
Tubule100 ± 124 of 4 5.50Up
Hindgut43 ± 34 of 4 2.40Up
Heart17 ± 14 of 4 0.98None
Fat body29 ± 84 of 4 1.61None
Ovary6 ± 11 of 4 0.30Down
Testis12 ± 04 of 4 0.70None
Male accessory glands7 ± 31 of 4 0.40Down
Virgin spermatheca26 ± 34 of 4 1.42None
Mated spermatheca26 ± 34 of 4 1.46None
Adult carcass24 ± 34 of 4 1.30None
Larval CNS10 ± 34 of 4 0.56Down
Larval Salivary gland17 ± 13 of 4 0.94None
Larval midgut1211 ± 1614 of 466.09Up
Larval tubule83 ± 44 of 4 4.50Up
Larval hindgut189 ± 114 of 410.33Up
Larval fat body44 ± 74 of 4 2.50Up
Larval trachea6 ± 12 of 4 0.35Down
Larval carcass13 ± 23 of 4 0.75None
S2 cells (growing)5 ± 11 of 4 0.28Down
Whole fly18 ± 24 of 4

Looking for CG1082-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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