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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10824-RA through 18771 annotations produced 1 hits



/// (CG10824 /// DsimGD20003):

Annotation Number : CG10824
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038865
Gbrowse : chr3R:16984954-16986815 (-) // 100.0 //
Probeset : 1631523_at
Accessions : protein= NP_650951;, nucleotide= NM_142694;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from ele
FlyMine data for FBgn0038865.
BDGP gene expression has embryonic in situ data for CG10824: 4 pix of staining in 1 body parts.
Homophila reports that CG10824 is a close match (4e-12) to human gene NOGOR;RTN4R (NP_075380), a gene associated with {Schizophrenia, susceptibility to}, 181500 (3).
VDRC has 2 RNAi stocks for FBgn0038865 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 11 of 4 0.20Down
Head245 ± 194 of 4 3.70Up
Eye102 ± 104 of 4 1.55Up
Thoracicoabdominal ganglion13 ± 00 of 4 0.20Down
Salivary gland3 ± 00 of 4 0.06Down
Crop8 ± 20 of 4 0.10Down
Midgut12 ± 30 of 4 0.20Down
Tubule29 ± 42 of 4 0.40Down
Hindgut47 ± 24 of 4 0.70Down
Heart437 ± 404 of 4 6.60Up
Fat body679 ± 1324 of 410.25Up
Ovary3 ± 10 of 4 0.00Down
Testis31 ± 34 of 4 0.50Down
Male accessory glands10 ± 20 of 4 0.20Down
Virgin spermatheca844 ± 774 of 412.72Up
Mated spermatheca258 ± 264 of 4 3.90Up
Adult carcass339 ± 164 of 4 5.10Up
Larval CNS2 ± 10 of 4 0.03Down
Larval Salivary gland3 ± 00 of 4 0.06Down
Larval midgut5 ± 20 of 4 0.08Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut10 ± 40 of 4 0.16Down
Larval fat body189 ± 164 of 4 2.90Up
Larval trachea7 ± 30 of 4 0.11Down
Larval carcass36 ± 41 of 4 0.55Down
S2 cells (growing)2136 ± 244 of 432.20Up
Whole fly66 ± 44 of 4

Looking for CG10824-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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