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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10827-RA through 18771 annotations produced 1 hits



(CG10827):

Annotation Number : CG10827
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038845
Gbrowse : chr3R:16830880-16832709 (-) // 100.0 //
Probeset : 1637485_at
Accessions : protein= NP_650931;, nucleotide= NM_142674;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inf
FlyMine data for FBgn0038845.
BDGP gene expression has embryonic in situ data for CG10827: 4 pix of staining in 1 body parts.
Homophila reports that CG10827 is a close match (5e-94) to human gene (NP_001623), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0038845 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland4 ± 00 of 4 0.02Down
Crop1 ± 00 of 4 0.00Down
Midgut1673 ± 704 of 4 9.50Up
Tubule23 ± 23 of 4 0.10Down
Hindgut328 ± 64 of 4 1.90Up
Heart1 ± 00 of 4 0.01Down
Fat body0 ± 00 of 4 0.00Down
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass3 ± 20 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland3 ± 10 of 4 0.02Down
Larval midgut2571 ± 694 of 414.53Up
Larval tubule4 ± 21 of 4 0.00Down
Larval hindgut116 ± 144 of 4 0.66None
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass2 ± 00 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly177 ± 334 of 4

Looking for CG10827-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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