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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10830-RA through 18771 annotations produced 1 hits



(CG10830):

Annotation Number : CG10830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038839
Gbrowse : chr3R:16720164-16723042 (-) // 100.0 //
Probeset : 1635360_at
Accessions : protein= NP_650926;, nucleotide= NM_142669;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0008076 // voltage-gated potassium channel complex // infer
Interpro : 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein bindin
FlyMine data for FBgn0038839.
BDGP gene expression has embryonic in situ data for CG10830: 15 pix of staining in 5 body parts.
Homophila reports that CG10830 is a close match (1e-13) to human gene EPM3;KCTD7 (NP_694578), a gene associated with Epilepsy, progressive myoclonic 3, 611726 (3).
TRiP has 1 RNAi stocks for FBgn0038839 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038839 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1288 ± 324 of 434.90Up
Head284 ± 284 of 4 7.70Up
Eye45 ± 74 of 4 1.24None
Thoracicoabdominal ganglion767 ± 234 of 420.80Up
Salivary gland7 ± 20 of 4 0.20Down
Crop108 ± 64 of 4 2.90Up
Midgut35 ± 01 of 4 1.00None
Tubule3 ± 00 of 4 0.10Down
Hindgut45 ± 34 of 4 1.20None
Heart32 ± 24 of 4 0.88None
Fat body6 ± 30 of 4 0.18Down
Ovary9 ± 02 of 4 0.30Down
Testis11 ± 23 of 4 0.30Down
Male accessory glands10 ± 31 of 4 0.30Down
Virgin spermatheca1 ± 10 of 4 0.05Down
Mated spermatheca2 ± 00 of 4 0.07Down
Adult carcass8 ± 30 of 4 0.20Down
Larval CNS315 ± 574 of 4 8.55Up
Larval Salivary gland181 ± 104 of 4 4.91Up
Larval midgut19 ± 00 of 4 0.54Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut26 ± 14 of 4 0.73Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea2 ± 30 of 4 0.07Down
Larval carcass4 ± 10 of 4 0.12Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly37 ± 24 of 4

Looking for CG10830-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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