Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
About & FAQ
Top 50
Original data
Interesting meta-analysis

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG10833-RA through 18771 annotations produced 1 hits

Cyp28d1 (Cyp28d1):

Annotation Number : CG10833
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031689
Gbrowse : chr2L:5210478-5212450 (+) // 100.0 //
Probeset : 1633639_at
Accessions : protein= NP_608912;, nucleotide= NM_135068;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0031689.
BDGP gene expression has embryonic in situ data for Cyp28d1: 4 pix of staining in 1 body parts.
Homophila reports that CG10833 is a close match (6e-11) to human gene CA21H;CYP21;CYP21A2 (NP_000491), a gene associated with Adrenal hyperplasia, congenital, due to 21-hydroxylase deficiency (3);Hyperandrogenism, nonclassic type, due to 21-hydroxylase deficiency (3).
BioGrid reports that CG10833 interacts with CG6542 .
VDRC has 3 RNAi stocks for FBgn0031689 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1296 484 of 4 5.40Up
Head1522 804 of 4 6.40Up
Eye394 554 of 4 1.66None
Thoracicoabdominal ganglion1377 284 of 4 5.80Up
Salivary gland26 43 of 4 0.11Down
Crop31 34 of 4 0.10Down
Midgut2555 1194 of 410.70Up
Tubule470 74 of 4 2.00Up
Hindgut152 94 of 4 0.60None
Heart305 184 of 4 1.29None
Fat body336 504 of 4 1.41None
Ovary5 03 of 4 0.00Down
Testis20 91 of 4 0.10Down
Male accessory glands37 64 of 4 0.20Down
Virgin spermatheca2059 1044 of 4 8.66Up
Mated spermatheca499 994 of 4 2.10None
Adult carcass402 114 of 4 1.70Up
Larval CNS144 294 of 4 0.61None
Larval Salivary gland73 14 of 4 0.31Down
Larval midgut65 184 of 4 0.28Down
Larval tubule152 94 of 4 0.60None
Larval hindgut67 54 of 4 0.28Down
Larval fat body2334 3104 of 4 9.80Up
Larval trachea21 114 of 4 0.09Down
Larval carcass38 54 of 4 0.16Down
S2 cells (growing)52 64 of 4 0.22Down
Whole fly237 434 of 4

Looking for CG10833-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime