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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG10837-RE through 18771 annotations produced 3 hits



Eukaryotic initiation factor 4B (eIF-4B):

Annotation Number : CG10837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020660
Gbrowse : chr2RHet:2901751-2917318 (+) // 100.0 //
Probeset : 1640194_a_at
Accessions : protein= NP_001015319; /// NP_001015320; /// NP_001015321; /// NP_001015322;, nucleotide= NM_001015319; /// NM_001015320; /// NM_001015321; /// NM_001015322;
Pathway : 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from physical interaction /// 000582
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0020660.
BioGrid reports that CG10837 interacts with CG31999 CG4059 .
VDRC has 1 RNAi stocks for FBgn0020660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain852 254 of 4 1.20Up
Head871 644 of 4 1.20None
Eye1468 414 of 4 2.05Up
Thoracicoabdominal ganglion884 254 of 4 1.20Up
Salivary gland2102 554 of 4 2.93Up
Crop777 154 of 4 1.10None
Midgut548 224 of 4 0.80Down
Tubule832 184 of 4 1.20Up
Hindgut581 74 of 4 0.80Down
Heart742 404 of 4 1.04None
Fat body926 294 of 4 1.29Up
Ovary908 174 of 4 1.30Up
Testis320 124 of 4 0.40Down
Male accessory glands1190 104 of 4 1.70Up
Virgin spermatheca1210 214 of 4 1.69Up
Mated spermatheca1170 264 of 4 1.63Up
Adult carcass753 214 of 4 1.10None
Larval CNS729 614 of 4 1.02None
Larval Salivary gland1201 734 of 4 1.67Up
Larval midgut532 194 of 4 0.74Down
Larval tubule701 364 of 4 1.00None
Larval hindgut565 124 of 4 0.79Down
Larval fat body778 644 of 4 1.10None
Larval trachea716 494 of 4 1.00None
Larval carcass642 264 of 4 0.90None
S2 cells (growing)371 94 of 4 0.52Down
Whole fly717 324 of 4



Eukaryotic initiation factor 4B (eIF-4B):

Annotation Number : CG10837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020660
Gbrowse : chr2RHet:2901815-2902500 (+) // 100.0 //
Probeset : 1629261_at
Accessions : protein= NP_001015319; /// NP_001015320; /// NP_001015321; /// NP_001015322;, nucleotide= NM_001015319; /// NM_001015320; /// NM_001015321; /// NM_001015322;
Pathway : 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from physical interaction /// 000582
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0020660.
BioGrid reports that CG10837 interacts with CG31999 CG4059 .
VDRC has 1 RNAi stocks for FBgn0020660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 04 of 4 3.10Up
Head6 13 of 4 1.70None
Eye11 13 of 4 2.91Up
Thoracicoabdominal ganglion8 04 of 4 2.20None
Salivary gland48 84 of 412.05Up
Crop19 24 of 4 4.80Up
Midgut19 10 of 4 5.00Up
Tubule10 03 of 4 2.70Up
Hindgut16 04 of 4 4.00Up
Heart7 10 of 4 1.82None
Fat body22 144 of 4 5.59None
Ovary7 03 of 4 1.80None
Testis5 01 of 4 1.30None
Male accessory glands24 44 of 4 6.20Up
Virgin spermatheca10 12 of 4 2.50None
Mated spermatheca13 13 of 4 3.41Up
Adult carcass11 12 of 4 3.00Up
Larval CNS8 34 of 4 2.24None
Larval Salivary gland11 24 of 4 2.80None
Larval midgut6 20 of 4 1.59None
Larval tubule11 14 of 4 2.80Up
Larval hindgut8 14 of 4 2.02None
Larval fat body13 23 of 4 3.40Up
Larval trachea4 11 of 4 1.16None
Larval carcass6 02 of 4 1.67None
S2 cells (growing)7 13 of 4 1.83None
Whole fly4 20 of 4



Eukaryotic initiation factor 4B (eIF-4B):

Annotation Number : CG10837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020660
Gbrowse : chr2RHet:2901815-2902500 (+) // 100.0 //
Probeset : 1636358_a_at
Accessions : protein= NP_001015319; /// NP_001015320; /// NP_001015321; /// NP_001015322;, nucleotide= NM_001015319; /// NM_001015320; /// NM_001015321; /// NM_001015322;
Pathway : 0005829 // cytosol // inferred from direct assay /// 0005829 // cytosol // inferred from physical interaction /// 000582
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0020660.
BioGrid reports that CG10837 interacts with CG31999 CG4059 .
VDRC has 1 RNAi stocks for FBgn0020660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain588 234 of 4 1.10None
Head553 454 of 4 1.10None
Eye1002 274 of 4 1.94Up
Thoracicoabdominal ganglion527 214 of 4 1.00None
Salivary gland816 494 of 4 1.58Up
Crop675 604 of 4 1.30None
Midgut532 44 of 4 1.00None
Tubule112 14 of 4 0.20Down
Hindgut495 184 of 4 1.00None
Heart524 464 of 4 1.02None
Fat body497 1734 of 4 0.96None
Ovary697 134 of 4 1.30Up
Testis221 64 of 4 0.40Down
Male accessory glands611 174 of 4 1.20Up
Virgin spermatheca95 34 of 4 0.19Down
Mated spermatheca95 74 of 4 0.18Down
Adult carcass637 264 of 4 1.20Up
Larval CNS425 164 of 4 0.82Down
Larval Salivary gland801 1124 of 4 1.55None
Larval midgut288 174 of 4 0.56Down
Larval tubule740 184 of 4 1.40Up
Larval hindgut276 134 of 4 0.53Down
Larval fat body728 424 of 4 1.40Up
Larval trachea454 574 of 4 0.88None
Larval carcass371 144 of 4 0.72Down
S2 cells (growing)416 84 of 4 0.81Down
Whole fly516 234 of 4

Looking for CG10837-RE. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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